1 00:00:01,000 --> 00:00:04,000 OK. So today we're going to spend a little bit of time on some 2 00:00:04,000 --> 00:00:08,000 elementary chemistry just to develop our language that we use with one 3 00:00:08,000 --> 00:00:12,000 another. And so when I say hydrogen bond, you don't stare blankly at me 4 00:00:12,000 --> 00:00:16,000 and scratch your heads. Many of you have had this already. 5 00:00:16,000 --> 00:00:20,000 For many of you this is a review, but it's a useful review. 6 00:00:20,000 --> 00:00:24,000 We believe here at MIT of teaching things two or three times often, 7 00:00:24,000 --> 00:00:29,000 the same subject matter, but at increasing levels of sophistication. 8 00:00:29,000 --> 00:00:35,000 So I do this without apology. Our first issue here is how are 9 00:00:35,000 --> 00:00:41,000 atoms and molecules held together? And the most familiar way by which 10 00:00:41,000 --> 00:00:48,000 atoms and molecules are held together is, of course, 11 00:00:48,000 --> 00:00:54,000 the covalent bonds. And covalent bonds have an energy of roughly 80 12 00:00:54,000 --> 00:01:00,000 kilocalories per mole. And that's a rather strong energy to 13 00:01:00,000 --> 00:01:05,000 hold together two atoms because the energy, the thermal energy, 14 00:01:05,000 --> 00:01:10,000 that is the energy at, let's say, body temperature is about 0.6 15 00:01:10,000 --> 00:01:14,000 kilocalories per mole. And, therefore, if you had a bond, 16 00:01:14,000 --> 00:01:19,000 if there was something holding things together that was in this 17 00:01:19,000 --> 00:01:24,000 range or two or three or four times higher then the simple thermal 18 00:01:24,000 --> 00:01:29,000 energy at room temperature or at body temperature would be sufficient 19 00:01:29,000 --> 00:01:34,000 to break apart such a bond. But, in fact, this energy, 20 00:01:34,000 --> 00:01:38,000 the energy of a covalent bond is so much higher that it's highly 21 00:01:38,000 --> 00:01:43,000 unlikely that thermal energy is going to break apart a preexisting 22 00:01:43,000 --> 00:01:48,000 covalent bond. And I was just reading yesterday 23 00:01:48,000 --> 00:01:52,000 about how people were analyzing the mitochondrial DNA from some 24 00:01:52,000 --> 00:01:57,000 Neanderthal bones which were dug up. The last Neanderthal lived around 25 00:01:57,000 --> 00:02:02,000 30,000 years ago, our recently demised cousins. 26 00:02:02,000 --> 00:02:06,000 And they were analyzing the DNA sequences. And they got out of 27 00:02:06,000 --> 00:02:11,000 those analyses stretches of DNA that were 200, 300 nucleotides long. 28 00:02:11,000 --> 00:02:15,000 And that really is stunning testimonial to the fact that under 29 00:02:15,000 --> 00:02:20,000 very difficult conditions, nonetheless, complex biological 30 00:02:20,000 --> 00:02:24,000 molecules are able to survive over astounding periods of time, 31 00:02:24,000 --> 00:02:29,000 indeed those that are held together by the covalent bonds like this. 32 00:02:29,000 --> 00:02:33,000 Of course, you remember the film Jurassic Park where they used PCR 33 00:02:33,000 --> 00:02:37,000 reaction to resurrect the DNA of dinosaurs. That's a bit of a 34 00:02:37,000 --> 00:02:42,000 fantasy since dinosaurs left us, I guess, about 150 million years ago, 35 00:02:42,000 --> 00:02:46,000 something like that. There's a big difference, 36 00:02:46,000 --> 00:02:51,000 obviously, between 300,000 and 150 million year ago. 37 00:02:51,000 --> 00:02:55,000 Now, the fact is if you look at the way that molecules are actually 38 00:02:55,000 --> 00:03:00,000 hooked up, for instance, let's look at a water molecule here. 39 00:03:00,000 --> 00:03:04,000 Ideally there should be no charge on this molecule. 40 00:03:04,000 --> 00:03:08,000 And, in fact, there is no net charge. But the truth of the matter 41 00:03:08,000 --> 00:03:13,000 is, if one wants to get frank, that oxygen molecules, and we always 42 00:03:13,000 --> 00:03:17,000 are here, that oxygen molecules have a greater affinity for electrons 43 00:03:17,000 --> 00:03:22,000 than do hydrogen atoms, i.e., they are electronegative. 44 00:03:22,000 --> 00:03:26,000 And, therefore, what this means is that the swarms of electrons that 45 00:03:26,000 --> 00:03:31,000 are holding all this together at the orbitals are drawn more closely to 46 00:03:31,000 --> 00:03:35,000 the oxygen and the hydrogen atoms, i.e., the protons are relatively 47 00:03:35,000 --> 00:03:40,000 willing to give up their electrons. And what this means is that there's 48 00:03:40,000 --> 00:03:44,000 an unequal distribution. And, as a consequence, there is a 49 00:03:44,000 --> 00:03:48,000 fraction of a negative charge here at this end of the molecule and 50 00:03:48,000 --> 00:03:52,000 there are fractions of positive charges here because it's not as if 51 00:03:52,000 --> 00:03:56,000 they've totally given up the electrons, but the electrons are 52 00:03:56,000 --> 00:03:59,000 shifted more in this direction. And this molecule is therefore 53 00:03:59,000 --> 00:04:03,000 called a polar molecule by virtue of the fact that here it has a positive 54 00:04:03,000 --> 00:04:07,000 pole and here it has a negative pole. There are other pairs of molecules 55 00:04:07,000 --> 00:04:10,000 which are relatively equally electronegative. 56 00:04:10,000 --> 00:04:14,000 For example, here, if we have a carbon and a hydrogen, 57 00:04:14,000 --> 00:04:18,000 these two atoms are roughly equally matched in terms of their ability to 58 00:04:18,000 --> 00:04:22,000 pull electrons away, one from the other. And, 59 00:04:22,000 --> 00:04:25,000 as a consequence, there is no net shifting of charge. 60 00:04:25,000 --> 00:04:29,000 And keep in mind that this delta I show here is only a fraction of an 61 00:04:29,000 --> 00:04:33,000 electronic charge. It's not the entire electronic 62 00:04:33,000 --> 00:04:37,000 charge moved over. But this has important consequences 63 00:04:37,000 --> 00:04:41,000 for the entire biochemistry that we're about to get into both today 64 00:04:41,000 --> 00:04:46,000 and on Monday. Important because polar molecules, 65 00:04:46,000 --> 00:04:50,000 such as water like this, are able to dissolve certain compounds. 66 00:04:50,000 --> 00:04:55,000 And nonpolar molecules, which have large arrays of these kinds of bonds 67 00:04:55,000 --> 00:05:00,000 or carbon-carbon bonds, these are relatively insoluble in 68 00:05:00,000 --> 00:05:04,000 water, and that has important consequences for the organization of 69 00:05:04,000 --> 00:05:08,000 biological membranes. We might have a carbonyl bond here, 70 00:05:08,000 --> 00:05:12,000 that is a C going to an O via a double bond. And here we have, 71 00:05:12,000 --> 00:05:15,000 once again, a situation where the oxygen is far more avid in terms of 72 00:05:15,000 --> 00:05:19,000 its willingness and interest in pulling electrons toward itself. 73 00:05:19,000 --> 00:05:22,000 And, therefore, the carbon gives up a little bit of the electron cloud 74 00:05:22,000 --> 00:05:26,000 and it becomes slightly electropositive. 75 00:05:26,000 --> 00:05:30,000 Whereas, the oxygen atom becomes slightly electronegative. 76 00:05:30,000 --> 00:05:35,000 Now, the fact of the matter is that there are also other bonds that are 77 00:05:35,000 --> 00:05:40,000 noncovalent and are much less energetic. For example, 78 00:05:40,000 --> 00:05:46,000 let's talk for a moment about a hydrogen bond. 79 00:05:46,000 --> 00:05:51,000 And it's perhaps easiest to demonstrate a hydrogen bond by 80 00:05:51,000 --> 00:05:57,000 looking at the structure of two neighboring water molecules in a 81 00:05:57,000 --> 00:06:02,000 solution of water of all things. And, the fact of the matter is, 82 00:06:02,000 --> 00:06:06,000 let's say we draw one water molecule down here and one water molecule 83 00:06:06,000 --> 00:06:11,000 down here. What will happen is that this oxygen atom over here by virtue 84 00:06:11,000 --> 00:06:15,000 of its electronegativity will have a certain affinity for pulling this 85 00:06:15,000 --> 00:06:20,000 hydrogen atom toward itself. And, in fact, what actually happens 86 00:06:20,000 --> 00:06:25,000 in real life, whatever that is at the molecular level, 87 00:06:25,000 --> 00:06:29,000 is that this hydrogen atom may actually be bouncing back and forth 88 00:06:29,000 --> 00:06:34,000 between these two oxygens. It may be rapidly an interchange 89 00:06:34,000 --> 00:06:38,000 between them. This interchange causes a strong association between 90 00:06:38,000 --> 00:06:43,000 two neighboring water molecules. And, indeed, represents the reason 91 00:06:43,000 --> 00:06:48,000 why water does not vaporize at room temperature because the water 92 00:06:48,000 --> 00:06:52,000 molecules have a strong affinity or an avidity for one another. 93 00:06:52,000 --> 00:06:57,000 And, therefore, just to take some illustrations out of the book, 94 00:06:57,000 --> 00:07:02,000 this is the way it's illustrated in the book. 95 00:07:02,000 --> 00:07:07,000 Probably good to have a screen down. And here you can see the way that 96 00:07:07,000 --> 00:07:12,000 water molecules are actually arrayed in water. This is the lower 97 00:07:12,000 --> 00:07:17,000 illustration here. Just to indicate to you that the 98 00:07:17,000 --> 00:07:22,000 hydrogen atoms are not really the possession, the ownership of one 99 00:07:22,000 --> 00:07:27,000 molecule of water. They're just constantly being 100 00:07:27,000 --> 00:07:32,000 exchanged back and forth. And this back and forth exchange, 101 00:07:32,000 --> 00:07:37,000 this sharing of a hydrogen atom is what enables a hydrogen bond of 102 00:07:37,000 --> 00:07:43,000 roughly 5 kilocalories of energy per mole to hold things together. 103 00:07:43,000 --> 00:07:46,000 5 kilocalories is not much. It's only one order of magnitude 104 00:07:46,000 --> 00:07:50,000 above 0.6 rather than being two orders of magnitude. 105 00:07:50,000 --> 00:07:53,000 And, therefore, if one raises the temperature to the level of boiling, 106 00:07:53,000 --> 00:07:57,000 if the temperature is high enough, the thermal energy is high enough to 107 00:07:57,000 --> 00:08:01,000 rip apart these kinds of associations. 108 00:08:01,000 --> 00:08:05,000 Now, if we were to go back here to look at this carbonyl atom we would 109 00:08:05,000 --> 00:08:10,000 find the following sort of situation. Here we have this unequal sharing 110 00:08:10,000 --> 00:08:15,000 of electropositive and electronegative bonds. 111 00:08:15,000 --> 00:08:20,000 Let's put an acidic group like this. This is a carboxylic acid right 112 00:08:20,000 --> 00:08:25,000 here. Here we see a carbon bond to a hydroxyl here via 113 00:08:25,000 --> 00:08:30,000 this oxygen atom. Here, once again, 114 00:08:30,000 --> 00:08:34,000 we have an electronegative atom. And, in fact, if we talk about an 115 00:08:34,000 --> 00:08:38,000 ionized acid, normally in the absence of ionization there would be 116 00:08:38,000 --> 00:08:42,000 a net zero charge right here. But at neutral pH it may well be 117 00:08:42,000 --> 00:08:47,000 the case that the association, for various reasons, between this 118 00:08:47,000 --> 00:08:51,000 oxygen and this hydrogen will allow the hydrogen, or rather the proton, 119 00:08:51,000 --> 00:08:55,000 the nucleus of the hydrogen atom to just wander away. 120 00:08:55,000 --> 00:08:59,000 And, therefore, we can imagine there could be a net negative 121 00:08:59,000 --> 00:09:04,000 charge here. A whole, this has one full electron, 122 00:09:04,000 --> 00:09:08,000 electronegative charge here, the charge of one electron, 123 00:09:08,000 --> 00:09:12,000 and this proton will have ionized, will have left the carboxylic group 124 00:09:12,000 --> 00:09:16,000 in which it originated, and now we have an ionized acid 125 00:09:16,000 --> 00:09:20,000 group. Either before or even after this ionization, 126 00:09:20,000 --> 00:09:24,000 there is a strong affinity of the carboxyl group with the water around 127 00:09:24,000 --> 00:09:28,000 it because let's look at what happened before the ionization 128 00:09:28,000 --> 00:09:33,000 occurred. This carbon here is strong and 129 00:09:33,000 --> 00:09:37,000 electronegative. And, therefore, it will participate 130 00:09:37,000 --> 00:09:42,000 in hydrogen bonding to the water solvent here, i. 131 00:09:42,000 --> 00:09:46,000 ., this proton will be shared a bit between the oxygen of the water 132 00:09:46,000 --> 00:09:51,000 molecule and the oxygen right here. Similarly, here this oxygen will be 133 00:09:51,000 --> 00:09:55,000 slightly electronegative for the reasons I've just described. 134 00:09:55,000 --> 00:10:00,000 And here, once again, there may be some weak hydrogen bonding going on. 135 00:10:00,000 --> 00:10:04,000 Although, not as effective as over here where we have a double-bond 136 00:10:04,000 --> 00:10:09,000 where we have a lot of concentration of a cloud of electrons pulled 137 00:10:09,000 --> 00:10:13,000 towards the oxygen atom. And this begins to give us clues as 138 00:10:13,000 --> 00:10:18,000 to why certain molecules are soluble in water and others are insoluble. 139 00:10:18,000 --> 00:10:22,000 For example, if we look at aliphatic compounds. 140 00:10:22,000 --> 00:10:27,000 Let's look at a compound that's structured like this. 141 00:10:27,000 --> 00:10:34,000 I guess most people would call this 142 00:10:34,000 --> 00:10:38,000 pentane. And we can call it that, too. And this has no 143 00:10:38,000 --> 00:10:42,000 electronegativity or positivity by virtue of the equal affinities of 144 00:10:42,000 --> 00:10:47,000 these two kinds of atoms, that is the hydrogen and the carbons 145 00:10:47,000 --> 00:10:51,000 for electrons. And as a consequence, 146 00:10:51,000 --> 00:10:55,000 this will not be able to form any hydrogen bonds with a solvent around 147 00:10:55,000 --> 00:11:00,000 it if the solvent happens to be water. 148 00:11:00,000 --> 00:11:05,000 So there's not good bonding here. And this will, in fact, also if one 149 00:11:05,000 --> 00:11:10,000 puts this in a solution of water, this will cause all the water 150 00:11:10,000 --> 00:11:15,000 molecules to line up in a certain way, almost a quasi-crystal around 151 00:11:15,000 --> 00:11:21,000 the aliphatic molecule. They'll be ordered in a certain 152 00:11:21,000 --> 00:11:26,000 layer around the aliphatic molecule without being able to form any 153 00:11:26,000 --> 00:11:31,000 strong hydrogen bonds with them. And this ordering represents a loss 154 00:11:31,000 --> 00:11:36,000 of chaos, a loss of entropy. Entropy is chaos. It's disorder. 155 00:11:36,000 --> 00:11:40,000 It's what happens, let's say, at 10:55 when we all leave the room, 156 00:11:40,000 --> 00:11:45,000 all of a sudden order becomes chaotic. And here, 157 00:11:45,000 --> 00:11:50,000 before this lining up occurred, the water molecules were chaotically 158 00:11:50,000 --> 00:11:55,000 arrayed throughout the solvent. After this lining up occurred there 159 00:11:55,000 --> 00:12:00,000 was a loss of entropy, there was a loss of chaos. 160 00:12:00,000 --> 00:12:03,000 And thermodynamics tells us that generally the ordering of molecules 161 00:12:03,000 --> 00:12:07,000 is disfavored. And consequently we now have two 162 00:12:07,000 --> 00:12:11,000 reasons why this molecule doesn't like to be in the midst of water. 163 00:12:11,000 --> 00:12:15,000 First of all, it's unable to form hydrogen bonds with the solvent. 164 00:12:15,000 --> 00:12:19,000 And second of all there is a decrease in the entropy, 165 00:12:19,000 --> 00:12:23,000 in the chaos that occurs when this molecule directly confronts water. 166 00:12:23,000 --> 00:12:27,000 And because of those two reasons it turns out that this molecule doesn't 167 00:12:27,000 --> 00:12:31,000 like to be in water. The aliphatic molecule, 168 00:12:31,000 --> 00:12:35,000 as one would call this in organic chemistry, doesn't like to be in 169 00:12:35,000 --> 00:12:40,000 water. And a dislike of water is often called its hydrophobicity, 170 00:12:40,000 --> 00:12:45,000 or we often call it hydro, might as well spell it right, 171 00:12:45,000 --> 00:12:49,000 hydrophobic, i.e., it really hates to be in water. 172 00:12:49,000 --> 00:12:54,000 In fact, class, there's a second meaning for 173 00:12:54,000 --> 00:12:59,000 hydrophobia, or hydrophobic has a second meaning. 174 00:12:59,000 --> 00:13:03,000 Every five years I ask a class to see who knows what the second 175 00:13:03,000 --> 00:13:07,000 meaning of hydrophobia is. This is really obscure. Sorry? 176 00:13:07,000 --> 00:13:12,000 Rabies, right. The TAs aren't allowed to answer that. 177 00:13:12,000 --> 00:13:16,000 If somebody has rabies, at one stage of rabies, almost near 178 00:13:16,000 --> 00:13:21,000 the terminal stage, the individual becomes hydrophobic 179 00:13:21,000 --> 00:13:25,000 because he or she doesn't like to drink water, for reasons that are 180 00:13:25,000 --> 00:13:30,000 obscure at least to me. Now, conversely, 181 00:13:30,000 --> 00:13:35,000 molecules that have carboxyl group on it would be called hydrophilic. 182 00:13:35,000 --> 00:13:40,000 And, as we'll see over this lecture and the next one, 183 00:13:40,000 --> 00:13:45,000 these hydrophobic and hydrophilic tendencies tend to have great 184 00:13:45,000 --> 00:13:50,000 affects on the overall behavior of molecules. Let's, 185 00:13:50,000 --> 00:13:55,000 for example, imagine a situation where we have a long aliphatic tail 186 00:13:55,000 --> 00:14:00,000 like this. In fact, these tails can go on in certain 187 00:14:00,000 --> 00:14:05,000 aliphatic compounds. They can go on for 20 or even 30 188 00:14:05,000 --> 00:14:09,000 carbons. And at the end of this, let's just put arbitrarily a 189 00:14:09,000 --> 00:14:13,000 carboxyl group. And let's say we ionized it. 190 00:14:13,000 --> 00:14:17,000 So here's an acidic group that's ionized. It's shed its proton. 191 00:14:17,000 --> 00:14:21,000 It's actually acquired a negative charge. And now we have something, 192 00:14:21,000 --> 00:14:25,000 this molecule is a bit schizoid. Because on one end of it, 193 00:14:25,000 --> 00:14:29,000 it loves to be in water, the other end of it hates to be in water. 194 00:14:29,000 --> 00:14:33,000 And this has strong affects. It's sometimes called amphipathic, 195 00:14:33,000 --> 00:14:37,000 but we don't need to worry about that word. And, 196 00:14:37,000 --> 00:14:42,000 therefore, this carboxyl head loves to stick its head, 197 00:14:42,000 --> 00:14:46,000 to immerse its head in water. And these things, the aliphatic 198 00:14:46,000 --> 00:14:51,000 portion hates to be in water. Now, as a consequence of these 199 00:14:51,000 --> 00:14:55,000 rather conflicted feelings that these molecules have about water, 200 00:14:55,000 --> 00:14:59,000 we can ask the question what happens when we put such molecules 201 00:14:59,000 --> 00:15:04,000 actually into water? And what we see here is the 202 00:15:04,000 --> 00:15:09,000 following. That if we were to construct, for example, 203 00:15:09,000 --> 00:15:13,000 a molecule of the sort that has here, in this case we're talking about a 204 00:15:13,000 --> 00:15:18,000 molecule that has two hydrophobic tails. We'll get into its detailed 205 00:15:18,000 --> 00:15:23,000 structure shortly, but just imagine for a moment two 206 00:15:23,000 --> 00:15:28,000 long hydrophobic tails out here ended with a hydrophilic head. 207 00:15:28,000 --> 00:15:33,000 And under such situations, if we put thousands of these or 208 00:15:33,000 --> 00:15:38,000 millions of these molecules into a solution of water, 209 00:15:38,000 --> 00:15:43,000 what we will then see is, no pointer? All right. Pointer? 210 00:15:43,000 --> 00:15:48,000 All right. What we will then see is that the hydrophilic head groups, 211 00:15:48,000 --> 00:15:53,000 which are here depicted in red, will point their way outwards, 212 00:15:53,000 --> 00:15:59,000 they will want to stick their heads in water. 213 00:15:59,000 --> 00:16:03,000 And conversely the hydrophobic tails fleeing from the water will actually 214 00:16:03,000 --> 00:16:08,000 associate one with the other. And so you have a structure that's 215 00:16:08,000 --> 00:16:12,000 called, in this case, an a micelle where you form this 216 00:16:12,000 --> 00:16:17,000 little globular sphere where the lipid tails are tucked inside. 217 00:16:17,000 --> 00:16:22,000 And, therefore, are actually being shielded from any direct exposure to 218 00:16:22,000 --> 00:16:26,000 water. This structure down here, the lipid bilayer, is actually, as 219 00:16:26,000 --> 00:16:31,000 we will discuss in greater detail shortly, the overall topology of the 220 00:16:31,000 --> 00:16:36,000 way most biological membranes are organized. 221 00:16:36,000 --> 00:16:40,000 In fact, virtually all of them. Why is that? Because biological 222 00:16:40,000 --> 00:16:45,000 membranes separate two hydrophilic or two aqueous spaces. 223 00:16:45,000 --> 00:16:50,000 Thank you, sir. A gentleman you are. So here is an aqueous space 224 00:16:50,000 --> 00:16:55,000 and here is an aqueous space. And as we see the hydrophilic heads 225 00:16:55,000 --> 00:17:00,000 are immersed or sticking their heads into the hydrophilic space. 226 00:17:00,000 --> 00:17:04,000 This is called a lipid bilayer. And, obviously, it's highly 227 00:17:04,000 --> 00:17:08,000 effective for separately these two aqueous compartments. 228 00:17:08,000 --> 00:17:12,000 In eukaryotic cells, as I mentioned last time, there is an enormous 229 00:17:12,000 --> 00:17:16,000 premium placed on separating and segregating different aqueous 230 00:17:16,000 --> 00:17:20,000 compartments which is invariably achieved through the device of 231 00:17:20,000 --> 00:17:24,000 constructing these lipid bilayers. Here's a vesicle. A vesicle is 232 00:17:24,000 --> 00:17:28,000 more complicated than a micelle. Because if you look at the membrane 233 00:17:28,000 --> 00:17:32,000 lining the vesicle, you see it's actually a lipid 234 00:17:32,000 --> 00:17:36,000 bilayer, but one that in 3-dimensional space is actually a 235 00:17:36,000 --> 00:17:40,000 sphere. And in the case of this vesicle, we can well imagine that on 236 00:17:40,000 --> 00:17:43,000 the inside of the vesicle water is kept, can be stored, 237 00:17:43,000 --> 00:17:47,000 and on the outside of the vesicle water can be stored. 238 00:17:47,000 --> 00:17:51,000 And many of the membranes that we see within the cytoplasms themselves 239 00:17:51,000 --> 00:17:55,000 are actually constructed on this kind of design. 240 00:17:55,000 --> 00:17:58,000 So when we draw, for example, in this case the Golgi 241 00:17:58,000 --> 00:18:02,000 apparatus, which I mentioned to you in passing last time we met, 242 00:18:02,000 --> 00:18:05,000 each one of these membranes here, it's obviously drawn as a double 243 00:18:05,000 --> 00:18:09,000 line, but whenever you see a membrane indicated, 244 00:18:09,000 --> 00:18:13,000 implicit in that drawing is the fact that each one of these membranes is 245 00:18:13,000 --> 00:18:16,000 actually a bilayer. There are never any monolayers of 246 00:18:16,000 --> 00:18:20,000 lipids in living cells. Each one of these vesicles you see 247 00:18:20,000 --> 00:18:24,000 here is actually a lipid bilayer with an aqueous inside and, 248 00:18:24,000 --> 00:18:28,000 once again, aqueous on the outside. Again, much of the thermodynamic 249 00:18:28,000 --> 00:18:34,000 stability that allows these vesicles to remain intact rather than just 250 00:18:34,000 --> 00:18:39,000 diffuse apart is created by these hydrophilic and hydrophobic forces 251 00:18:39,000 --> 00:18:45,000 which tie such molecules together or will rip them apart. 252 00:18:45,000 --> 00:18:51,000 Now, in truth there are yet other kinds of forces that govern the 253 00:18:51,000 --> 00:18:56,000 affinity of molecules to one another. For example, let's imagine a 254 00:18:56,000 --> 00:19:02,000 situation where we have an ionized acid group of the sort we just 255 00:19:02,000 --> 00:19:07,000 talked about before. Now, by the way, 256 00:19:07,000 --> 00:19:11,000 here, let's say I'll draw the negative charge on one of these two 257 00:19:11,000 --> 00:19:15,000 oxygens, if you can see that. But the truth is that the electrons 258 00:19:15,000 --> 00:19:19,000 are swarming back and forth, and so the negative charge is shared 259 00:19:19,000 --> 00:19:23,000 equally, the negative one electron charge is shared equally between 260 00:19:23,000 --> 00:19:27,000 these two oxygen atoms. And this is obviously an area of 261 00:19:27,000 --> 00:19:32,000 great electronegativity. Independent of that, 262 00:19:32,000 --> 00:19:36,000 let's imagine up here we have a basic group, let's say an amine 263 00:19:36,000 --> 00:19:40,000 group over here. And, the fact of the matter is, 264 00:19:40,000 --> 00:19:44,000 amine groups, NH2 groups, that's what an amine is, 265 00:19:44,000 --> 00:19:48,000 here's an amine group. This is a carboxylic group. 266 00:19:48,000 --> 00:19:52,000 And the amine group, which is used very often in biochemistry, 267 00:19:52,000 --> 00:19:56,000 actually has an affinity. It has an unpaired set of electrons on the 268 00:19:56,000 --> 00:20:00,000 nitrogen, and so it likes to attract protons to it, 269 00:20:00,000 --> 00:20:04,000 which makes it, causes it to be called basic. 270 00:20:04,000 --> 00:20:08,000 And this attraction, the scavenging of protons, 271 00:20:08,000 --> 00:20:12,000 perhaps from the water, will obviously give this whole group here 272 00:20:12,000 --> 00:20:16,000 a net positive charge, a charge equal to the charge of one 273 00:20:16,000 --> 00:20:20,000 proton. Here, once again, we can imagine this is 274 00:20:20,000 --> 00:20:24,000 hydrophilic because this charge group can once again also associate 275 00:20:24,000 --> 00:20:29,000 quite intimately with aqueous solvent. 276 00:20:29,000 --> 00:20:33,000 Now, independent of any other forces that might exist here, 277 00:20:33,000 --> 00:20:37,000 indeed one could imagine situations where there is a sharing of a proton. 278 00:20:37,000 --> 00:20:41,000 And, therefore, a hydrogen bond formed between these 279 00:20:41,000 --> 00:20:45,000 two. Independent of that is the simple electrostatic interaction of 280 00:20:45,000 --> 00:20:50,000 these two groups. That is the mutual attraction of 281 00:20:50,000 --> 00:20:54,000 positive and negative groups, one to the other. And the 282 00:20:54,000 --> 00:20:58,000 electrostatic interactions, you cannot quantify exactly how many 283 00:20:58,000 --> 00:21:02,000 kilocalories a mole there is because the energetic value in electrostatic 284 00:21:02,000 --> 00:21:06,000 interaction is equal to one over r squared where r is the distance 285 00:21:06,000 --> 00:21:11,000 between these two charged groups. And obviously the further apart you 286 00:21:11,000 --> 00:21:15,000 get the weaker the attraction with one another. There are also what 287 00:21:15,000 --> 00:21:19,000 are called van der Walls interactions. There are largely of 288 00:21:19,000 --> 00:21:23,000 interest to a very small community of biochemists. 289 00:21:23,000 --> 00:21:27,000 You probably will never, you may never hear this term again 290 00:21:27,000 --> 00:21:32,000 in your life. And van der Waals interactions come 291 00:21:32,000 --> 00:21:36,000 from the fact that if we were to have, for example, 292 00:21:36,000 --> 00:21:40,000 two molecules over here which are not normally charged in any way, 293 00:21:40,000 --> 00:21:44,000 let's just talk about two aliphatic chains again. And I won't put in 294 00:21:44,000 --> 00:21:49,000 all the protons and everything, but just imagine a situation like 295 00:21:49,000 --> 00:21:53,000 this. What will happen is that because of the fluctuations of 296 00:21:53,000 --> 00:21:57,000 electrons, because the electrons are swimming around here all the time, 297 00:21:57,000 --> 00:22:02,000 moving from one area to the next they're never equally distributed 298 00:22:02,000 --> 00:22:06,000 homogenously over a long period of time, there will be brief instance 299 00:22:06,000 --> 00:22:10,000 in time, microseconds or even nanoseconds when there happens to be 300 00:22:10,000 --> 00:22:15,000 more electrons over here than right here. 301 00:22:15,000 --> 00:22:19,000 Just by chance. And this area of unequal 302 00:22:19,000 --> 00:22:23,000 distribution of electrons will in turn induce the opposite kind of 303 00:22:23,000 --> 00:22:27,000 electron shift in a neighboring molecule down here. 304 00:22:27,000 --> 00:22:31,000 Obviously, depending on the distance between them. 305 00:22:31,000 --> 00:22:34,000 But the negative here will repel electrons down here. 306 00:22:34,000 --> 00:22:38,000 The positive here will attract electrons down here. 307 00:22:38,000 --> 00:22:42,000 And so you will have these two quasi-polar arrangements here and 308 00:22:42,000 --> 00:22:46,000 here, very ephemeral, that is lasting for a very short 309 00:22:46,000 --> 00:22:50,000 transient period of time. But, nonetheless, sufficient to 310 00:22:50,000 --> 00:22:54,000 give a very weak interaction between these two molecules which may 311 00:22:54,000 --> 00:22:58,000 persist only for a microsecond and then be dissipated because the 312 00:22:58,000 --> 00:23:02,000 charges then redistributed once again. 313 00:23:02,000 --> 00:23:06,000 And, as a consequence of that, one has very weak interactions which, 314 00:23:06,000 --> 00:23:11,000 in the great scheme of things, play only a very minor role in the 315 00:23:11,000 --> 00:23:16,000 overall energy which holds molecules together. Now, 316 00:23:16,000 --> 00:23:21,000 with that background in mind, let's begin to elaborate on it, 317 00:23:21,000 --> 00:23:25,000 on how we can make molecules that have interesting properties that 318 00:23:25,000 --> 00:23:30,000 enable them, among other things, to participate in the construction 319 00:23:30,000 --> 00:23:35,000 of lipid bilayers, which will be the first object of 320 00:23:35,000 --> 00:23:40,000 our attentions today in terms of actual biochemistry. 321 00:23:40,000 --> 00:23:44,000 So here's a fatty acid. We see that up here. I, 322 00:23:44,000 --> 00:23:48,000 in effect, drew you the structure of a fatty acid up here already once 323 00:23:48,000 --> 00:23:53,000 before. And what we can see is through a linkage known as 324 00:23:53,000 --> 00:23:57,000 esterification we can create this molecule. So what do I 325 00:23:57,000 --> 00:24:02,000 mean by esterification? Well, in this case we're talking 326 00:24:02,000 --> 00:24:07,000 about a situation here where we have a carbon atom over here like this 327 00:24:07,000 --> 00:24:12,000 with a hydroxyl group. You see it over here. And what 328 00:24:12,000 --> 00:24:17,000 we're doing is we're dehydrating this, we're pulling out one net 329 00:24:17,000 --> 00:24:22,000 molecule of water. And each time we do that, 330 00:24:22,000 --> 00:24:27,000 on three separate occasions, what we end up doing is to create 331 00:24:27,000 --> 00:24:32,000 instead of this is to create a covalent bond between these two. 332 00:24:32,000 --> 00:24:36,000 And so the end product of dehydrating this, 333 00:24:36,000 --> 00:24:40,000 pulling out one net molecule of water is that we end up with a 334 00:24:40,000 --> 00:24:48,000 structure that looks like this. 335 00:24:48,000 --> 00:24:53,000 And you see that happening on at least three different occasions, 336 00:24:53,000 --> 00:24:58,000 here, here and here. Well, actually, I should put a carbon over here. 337 00:24:58,000 --> 00:25:02,000 So here we have three esterifications. 338 00:25:02,000 --> 00:25:07,000 The hydroxyl group in each case is reacting with a carboxyl group here 339 00:25:07,000 --> 00:25:11,000 pulling out one water, and each case creating what's called 340 00:25:11,000 --> 00:25:16,000 triacylglyercol or triglyceride. Triglyceride refers to the fact 341 00:25:16,000 --> 00:25:21,000 that we started here with a glycerol and we have now esterified it. 342 00:25:21,000 --> 00:25:25,000 Now, in fact, there are two directions here in this 343 00:25:25,000 --> 00:25:30,000 kind of reaction. Esterification is the kind of 344 00:25:30,000 --> 00:25:34,000 linkage that we just showed here. And the truth is that vast numbers 345 00:25:34,000 --> 00:25:38,000 of biochemical linkages are made by esterification reactions and 346 00:25:38,000 --> 00:25:43,000 reversed by reactions that are called simply hydrolysis. 347 00:25:43,000 --> 00:25:47,000 And, in this case, what we're referring to is the fact that if one 348 00:25:47,000 --> 00:25:51,000 were to reintroduce a water molecule into each of these three linkages, 349 00:25:51,000 --> 00:25:56,000 one, two and three, we would break the bond and cause this entire 350 00:25:56,000 --> 00:26:00,000 structure to revert to the two precursors that existed or 351 00:26:00,000 --> 00:26:05,000 preexisted prior to these three esterification reactions. 352 00:26:05,000 --> 00:26:10,000 And time and again you'll see, over the next weeks, that 353 00:26:10,000 --> 00:26:16,000 esterification reactions are important for constructing different 354 00:26:16,000 --> 00:26:22,000 kinds of molecules. Now, the fact of the matter is we 355 00:26:22,000 --> 00:26:28,000 can do other kinds of modifications of a glycerol like this. 356 00:26:28,000 --> 00:26:32,000 Here what we've done, instead of adding a third fatty acid, 357 00:26:32,000 --> 00:26:36,000 note what was done here. Here through an esterification, 358 00:26:36,000 --> 00:26:40,000 let's look up at this one here, instead of adding a third fatty acid, 359 00:26:40,000 --> 00:26:44,000 we've saved, we've reserved one of the three groups of the glycerol. 360 00:26:44,000 --> 00:26:48,000 Here's what we saw just before. We've saved one of the three groups 361 00:26:48,000 --> 00:26:52,000 of the glycerol and put on instead this highly hydrophilic phosphate 362 00:26:52,000 --> 00:26:56,000 group, once again through a dehydration reaction, an 363 00:26:56,000 --> 00:27:00,000 esterification reaction. And now what we've done is add 364 00:27:00,000 --> 00:27:04,000 insult to injury because in the absence of this phosphate it would 365 00:27:04,000 --> 00:27:07,000 have a hydroxyl here which is mildly hydrophilic. But now look how 366 00:27:07,000 --> 00:27:11,000 strongly charged this is. Here are two negative charges, 367 00:27:11,000 --> 00:27:14,000 one electron each. And this is already a bit electronegative. 368 00:27:14,000 --> 00:27:18,000 So here we have an extremely potent hydrophilic entity. 369 00:27:18,000 --> 00:27:21,000 And here the degree of schizophrenia between one end of the 370 00:27:21,000 --> 00:27:25,000 molecule and the other is greatly exaggerated. Here, 371 00:27:25,000 --> 00:27:29,000 in fact, this is extremely hydrophilic. 372 00:27:29,000 --> 00:27:33,000 And, as a consequence of that, this really likes to stick its head 373 00:27:33,000 --> 00:27:37,000 inside water. And when we therefore talk about, we draw the images of 374 00:27:37,000 --> 00:27:41,000 different kinds of membranes, like this I showed you before the 375 00:27:41,000 --> 00:27:46,000 two tails. Here you saw the two tails I drew before in that diagram. 376 00:27:46,000 --> 00:27:50,000 Here's what we can imagine they actually look like in more real 377 00:27:50,000 --> 00:27:54,000 molecular terms. And the hydrophilic heads sticking 378 00:27:54,000 --> 00:27:58,000 in the water, this is just repeating what we saw before, 379 00:27:58,000 --> 00:28:03,000 become even more hydrophilic if we look at a molecule like this. 380 00:28:03,000 --> 00:28:07,000 Let's look at this thing here. Here's a very long hydrophobic tail. 381 00:28:07,000 --> 00:28:11,000 Here are the two glycerols once again. Here is the phosphate. 382 00:28:11,000 --> 00:28:15,000 And keep in mind that phosphate obviously has these extra oxygens. 383 00:28:15,000 --> 00:28:19,000 Phosphate can react with more than just one partner, 384 00:28:19,000 --> 00:28:23,000 the glycerol down here. In this case we've added this group 385 00:28:23,000 --> 00:28:27,000 up here. And this group up here is, once again, this happens to be a 386 00:28:27,000 --> 00:28:31,000 serine which is an amino acid, this also happens to be quite 387 00:28:31,000 --> 00:28:35,000 hydrophilic. Here's our old friend the basic 388 00:28:35,000 --> 00:28:39,000 amino group. Here's the carboxyl group. This is a bit hydrophobic, 389 00:28:39,000 --> 00:28:43,000 CH2. And then we once again have the hydrophilic head here. 390 00:28:43,000 --> 00:28:47,000 And, therefore, we imagine, if we look at what's called a 391 00:28:47,000 --> 00:28:50,000 space-filling model, and a space-filling model really is 392 00:28:50,000 --> 00:28:54,000 intended to show us what one imagines if one had this vision, 393 00:28:54,000 --> 00:28:58,000 which we don't have, how much space each of these atoms would actually 394 00:28:58,000 --> 00:29:02,000 take up if one were able to see them. 395 00:29:02,000 --> 00:29:07,000 And here we see this space filling model. This lipid molecule here is 396 00:29:07,000 --> 00:29:12,000 actually slightly kinked with its hydrophilic head tucked into the 397 00:29:12,000 --> 00:29:18,000 water space. And so here's actually the way that many biological 398 00:29:18,000 --> 00:29:23,000 membranes look in terms of the way that they are constructed. 399 00:29:23,000 --> 00:29:28,000 Now, the fact of the matter is this also affords the cell the ability to 400 00:29:28,000 --> 00:29:34,000 segregate contents on one or the other side of whatever lipid bilayer 401 00:29:34,000 --> 00:29:39,000 it happens to have constructed. And here we can see about the 402 00:29:39,000 --> 00:29:44,000 semi-permeability, how permeable these membranes are to 403 00:29:44,000 --> 00:29:49,000 different kinds of molecules. Permeability obviously refers to 404 00:29:49,000 --> 00:29:54,000 the ability of this membrane to obstruct or to allow the migration 405 00:29:54,000 --> 00:30:00,000 of molecules from one side to the other. 406 00:30:00,000 --> 00:30:03,000 Ions, and these ions we see right here are obviously highly 407 00:30:03,000 --> 00:30:07,000 hydrophilic by virtue of their charge. That's explains, 408 00:30:07,000 --> 00:30:11,000 in fact, why, for example, table salt goes so readily into 409 00:30:11,000 --> 00:30:15,000 solution, because it readily ionizes into sodium, NA and CL, 410 00:30:15,000 --> 00:30:18,000 which then are avidly taken up by the water molecules. 411 00:30:18,000 --> 00:30:22,000 So these are highly hydrophilic ions. And the questions is, 412 00:30:22,000 --> 00:30:26,000 can they go from one side of the membrane to the other? 413 00:30:26,000 --> 00:30:30,000 And the answer is absolutely not or highly improbably. Why? 414 00:30:30,000 --> 00:30:33,000 Because these are so highly hydrophilic, the water molecules 415 00:30:33,000 --> 00:30:37,000 love to gather around them and form hydrogen bonds and electrostatic 416 00:30:37,000 --> 00:30:40,000 bonds with them. And if one of these ions ventures 417 00:30:40,000 --> 00:30:44,000 over here, it's going from an area where it's warmly embraced by the 418 00:30:44,000 --> 00:30:47,000 solvent molecules to an area where these molecules intensely dislike 419 00:30:47,000 --> 00:30:51,000 these ions. And, therefore, thermodynamically the 420 00:30:51,000 --> 00:30:55,000 entrance of any one of these ions into the membrane, 421 00:30:55,000 --> 00:30:58,000 into the hydrophobic portion of the membrane is highly disfavored, 422 00:30:58,000 --> 00:31:02,000 which makes the membrane essentially, for all practical purposes, 423 00:31:02,000 --> 00:31:05,000 impermeable. The same can be said of glucose 424 00:31:05,000 --> 00:31:09,000 which happens to be a carbohydrate. We'll talk about it shortly. But 425 00:31:09,000 --> 00:31:12,000 it's also nicely hydrophilic. It also can go in water. In fact, 426 00:31:12,000 --> 00:31:15,000 it can go through. And it's actually the case, 427 00:31:15,000 --> 00:31:19,000 to my knowledge, that one doesn't really understand to this day why 428 00:31:19,000 --> 00:31:22,000 lipid bilayers are reasonably permeable to water. 429 00:31:22,000 --> 00:31:26,000 You would say, well, water shouldn't be able to go 430 00:31:26,000 --> 00:31:29,000 through. It clearly doesn't have to have a 431 00:31:29,000 --> 00:31:32,000 net positive or negative charge, but the physical chemist, if you 432 00:31:32,000 --> 00:31:35,000 asked them why does water, why is water able to go through 433 00:31:35,000 --> 00:31:38,000 lipid bilayers? They'll say, well, 434 00:31:38,000 --> 00:31:41,000 we've been working on that and we'll get you an answer in the next five 435 00:31:41,000 --> 00:31:44,000 or ten years. And they said that 40 years ago and 30 years ago, 436 00:31:44,000 --> 00:31:47,000 and they're still saying it. And we don't really understand why 437 00:31:47,000 --> 00:31:50,000 water goes through, which is an embarrassment because 438 00:31:50,000 --> 00:31:53,000 here's one of the fundamental biochemical properties of living 439 00:31:53,000 --> 00:31:56,000 matter that is poorly understood. Gases can go right through. 440 00:31:56,000 --> 00:32:00,000 And amino acids, ATP, glucose 6 phosphate, 441 00:32:00,000 --> 00:32:05,000 highly hydrophilic, can also not go through. Now, 442 00:32:05,000 --> 00:32:09,000 the advantage of this is that a cell can accumulate large concentrations 443 00:32:09,000 --> 00:32:14,000 of these molecules either on the inside or it can pump them to the 444 00:32:14,000 --> 00:32:19,000 outside. In other words, it can create great gradients in the 445 00:32:19,000 --> 00:32:23,000 concentrations of different kinds of ions. For example, 446 00:32:23,000 --> 00:32:28,000 in many cells, the concentration of calcium, CA++ is a thousand times 447 00:32:28,000 --> 00:32:33,000 higher on the outside of the cell than on the inside of the cell which 448 00:32:33,000 --> 00:32:38,000 is a testimonial to how impermeable these lipid bilayer membranes are. 449 00:32:38,000 --> 00:32:41,000 The fact of the matter is I'm fudging a little bit here because in 450 00:32:41,000 --> 00:32:45,000 the lipid bilayers of the plasma membrane of the cell, 451 00:32:45,000 --> 00:32:49,000 the outer membrane of the cell that we talked about in passing last time, 452 00:32:49,000 --> 00:32:53,000 there are ion pumps which are constantly working away pumping ions 453 00:32:53,000 --> 00:32:57,000 from one side to the other overcomes the little bit of leakage which may 454 00:32:57,000 --> 00:33:01,000 have occurred if a calcium ion happens to have snuck through in one 455 00:33:01,000 --> 00:33:05,000 direction or the other. And we end up expending a lot of 456 00:33:05,000 --> 00:33:10,000 energy to keep these ion gradients in appropriate concentrations on the 457 00:33:10,000 --> 00:33:15,000 outside and the inside. In fact, virtually all the energy 458 00:33:15,000 --> 00:33:20,000 that is expended in our brain, almost all of it is expended to 459 00:33:20,000 --> 00:33:25,000 power the ion pumps which are constantly insuring that the 460 00:33:25,000 --> 00:33:30,000 concentrations of certain ions on the outside and the inside of 461 00:33:30,000 --> 00:33:36,000 neurons are kept at their proper respective levels. 462 00:33:36,000 --> 00:33:40,000 It could therefore be that actually more than half of our metabolic 463 00:33:40,000 --> 00:33:44,000 burden every day is expended just keeping the ions segregated on the 464 00:33:44,000 --> 00:33:48,000 outside and inside of cells. For example, potassium is at high 465 00:33:48,000 --> 00:33:52,000 levels inside cells, sodium is at high levels outside 466 00:33:52,000 --> 00:33:56,000 cells, just to site some arbitrary examples. There are also, 467 00:33:56,000 --> 00:34:00,000 by the way, as I mentioned last time, channels. 468 00:34:00,000 --> 00:34:04,000 And channels are actually just little doughnut shaped objects which 469 00:34:04,000 --> 00:34:08,000 are placed, inserted into lipid bilayers in the plasma membranes and 470 00:34:08,000 --> 00:34:13,000 just allow for the passive diffusion of an ion through them, 471 00:34:13,000 --> 00:34:17,000 through the doughnut hole enabling an ion, so if here's the lipid 472 00:34:17,000 --> 00:34:22,000 bilayer, not showing its two things, these kinds of doughnut shaped 473 00:34:22,000 --> 00:34:26,000 protein aggregates will allow the passage of ions in one 474 00:34:26,000 --> 00:34:31,000 direction or another. And here energy is not being 475 00:34:31,000 --> 00:34:35,000 expended to enable this passage. It may just be through diffusion. 476 00:34:35,000 --> 00:34:39,000 If there's a higher concentration of ion on side of the lipid bilayer 477 00:34:39,000 --> 00:34:43,000 and a lower one on this side, this diffusion will allow the ion to 478 00:34:43,000 --> 00:34:47,000 migrate through the bore of the ion channel from one side to the other. 479 00:34:47,000 --> 00:34:51,000 In fact, even though this does not involve the expenditure of energy on 480 00:34:51,000 --> 00:34:55,000 the part of the cell, the cell may actually use a gating 481 00:34:55,000 --> 00:35:00,000 mechanism to open or close these channels. 482 00:35:00,000 --> 00:35:04,000 When the channels are closed then the ions cannot move through. 483 00:35:04,000 --> 00:35:08,000 When the channels are gated open then diffusion can take over and 484 00:35:08,000 --> 00:35:12,000 insure the transfer, the transportation of ions from one 485 00:35:12,000 --> 00:35:17,000 side to the other. Now, having said that, 486 00:35:17,000 --> 00:35:21,000 we can begin to look at yet other higher level structures. 487 00:35:21,000 --> 00:35:25,000 Here, by the way, is a better drawing than the one I provided you. 488 00:35:25,000 --> 00:35:30,000 This comes from your book of what a vesicle looks like. 489 00:35:30,000 --> 00:35:34,000 Here's what it looks like under the electron microscope and here's what 490 00:35:34,000 --> 00:35:39,000 it looks like when a talented rather than hapless and hopeless artist 491 00:35:39,000 --> 00:35:44,000 like myself tries to draw it. So let's just say that's our intro 492 00:35:44,000 --> 00:35:49,000 into lipids and membranes. And let's move onto the next layer 493 00:35:49,000 --> 00:35:54,000 of complexity. And the next layer of complexity in 494 00:35:54,000 --> 00:35:59,000 terms of molecules represents carbohydrates. 495 00:35:59,000 --> 00:36:03,000 And when we talk about a carbohydrate amongst ourselves we're 496 00:36:03,000 --> 00:36:07,000 talking about a molecule which, roughly speaking, has one carbon 497 00:36:07,000 --> 00:36:11,000 atom for every water molecule. And we'll shortly indulge ourselves 498 00:36:11,000 --> 00:36:15,000 in talking about all kinds of different carbohydrate molecules. 499 00:36:15,000 --> 00:36:19,000 Here is really one of the most important carbohydrate molecules, 500 00:36:19,000 --> 00:36:23,000 glucose. And what should we note about glucose? 501 00:36:23,000 --> 00:36:27,000 Well, the first thing you should see is that glucose has six carbon 502 00:36:27,000 --> 00:36:31,000 atoms. And, therefore, as a consequence it's called a 503 00:36:31,000 --> 00:36:35,000 hexose. We're going to talk about pentoses 504 00:36:35,000 --> 00:36:39,000 very shortly. They only have five, to state the obvious. Glycerol, 505 00:36:39,000 --> 00:36:44,000 which we talked about before, is also considered in one sense a 506 00:36:44,000 --> 00:36:48,000 carbohydrate, but it's been called by some people a triose. 507 00:36:48,000 --> 00:36:53,000 It only has three carbon atoms. And you can imagine, therefore, in 508 00:36:53,000 --> 00:36:57,000 principal that there are certain biochemical mechanisms which indeed 509 00:36:57,000 --> 00:37:02,000 exist which enable one to join two glycerol molecules, 510 00:37:02,000 --> 00:37:07,000 one to the other, to create something like a hexose, glucose. 511 00:37:07,000 --> 00:37:11,000 In fact, what we see from this drawing, expertly drawn by yours 512 00:37:11,000 --> 00:37:16,000 truly, is that the hexose molecule isn't really a linear molecule in 513 00:37:16,000 --> 00:37:20,000 solution. What happens is that because of various steric and 514 00:37:20,000 --> 00:37:25,000 thermodynamic forces it likes to cyclize. So let me just mention, 515 00:37:25,000 --> 00:37:30,000 I've just used two words that are useful to know about. 516 00:37:30,000 --> 00:37:34,000 Steric or stereochemistry refers to the 3-dimensional structure of a 517 00:37:34,000 --> 00:37:39,000 molecule. And, obviously, the stereochemistry of a 518 00:37:39,000 --> 00:37:43,000 molecule is dictated by the flexibility with which participating 519 00:37:43,000 --> 00:37:48,000 atoms can form bonds, whether we have a trivalent atom 520 00:37:48,000 --> 00:37:52,000 like nitrogen or a tetravalent atom like carbon or a monovalent 521 00:37:52,000 --> 00:37:57,000 like hydrogen. And these structures, 522 00:37:57,000 --> 00:38:03,000 the stereochemistry is dictated both by what atoms are present here and 523 00:38:03,000 --> 00:38:08,000 by thermodynamic considerations which cause this particular hexose, 524 00:38:08,000 --> 00:38:13,000 indeed virtually all hexoses, to cyclize. When I say cyclize, 525 00:38:13,000 --> 00:38:19,000 obviously I mean to form a circular structure. Here we note one thing. 526 00:38:19,000 --> 00:38:24,000 You can see how the hydroxyl here actually attacks the positively 527 00:38:24,000 --> 00:38:30,000 charged carbon here in order to form this cyclic structure. 528 00:38:30,000 --> 00:38:36,000 You see one of the six points on this hexagonal structure here is 529 00:38:36,000 --> 00:38:43,000 oxygen. It's not carbon at all. So there is one oxygen and five 530 00:38:43,000 --> 00:38:49,000 carbons. And one of the carbons is relegated, is exiled to outside of 531 00:38:49,000 --> 00:38:56,000 the circle. It's sometimes called an extracyclic because it's sticking 532 00:38:56,000 --> 00:39:02,000 out from the actual circle. And this is the structure in which 533 00:39:02,000 --> 00:39:06,000 glucose actually exists inside cells. And, in fact, 534 00:39:06,000 --> 00:39:10,000 there is, in truth, two alternative ways by which 535 00:39:10,000 --> 00:39:14,000 glucose can cyclize, whether the oxygen attacks the 536 00:39:14,000 --> 00:39:18,000 carbon on the carbonyl group underneath or on top. 537 00:39:18,000 --> 00:39:22,000 And you see that gives us two alternative structures. 538 00:39:22,000 --> 00:39:26,000 What's different about them? Well, if we think about this hexose 539 00:39:26,000 --> 00:39:30,000 as existing in a plane, or the hexagon is in a plane 540 00:39:30,000 --> 00:39:35,000 In this case the oxygen is above the plane and the hydrogen is below the 541 00:39:35,000 --> 00:39:40,000 plane. With equal probability you can have these two atoms reversed 542 00:39:40,000 --> 00:39:45,000 where hydrogen is now above the plane and hydroxyl is below the 543 00:39:45,000 --> 00:39:50,000 plane. And both of these structures, these alternative structures can 544 00:39:50,000 --> 00:39:55,000 fairly be considered to be glucose. Now, let's get a little bit more 545 00:39:55,000 --> 00:40:00,000 complicated. Here we have fructose and we have galactose. 546 00:40:00,000 --> 00:40:04,000 And what we see here is, by the way, that we have exactly the 547 00:40:04,000 --> 00:40:08,000 same number of carbon atoms and hydrogen atoms and oxygen atoms but 548 00:40:08,000 --> 00:40:12,000 they're hooked up slightly differently. And here now we begin 549 00:40:12,000 --> 00:40:16,000 to get very picky about the disposition, the orientation of 550 00:40:16,000 --> 00:40:20,000 these different kinds of hydroxyls and hydrogens. 551 00:40:20,000 --> 00:40:24,000 And note, by the way, here that in many cases one doesn't 552 00:40:24,000 --> 00:40:28,000 even put in the H for the hydrogen. It's just implied by the end of 553 00:40:28,000 --> 00:40:31,000 this line. And here, if you were to look at 554 00:40:31,000 --> 00:40:35,000 this, you'll see here now we have two extra cyclic carbons. 555 00:40:35,000 --> 00:40:38,000 Here's galactose which is yet another hexose. 556 00:40:38,000 --> 00:40:41,000 These are all hexoses, but their stereochemistry creates 557 00:40:41,000 --> 00:40:45,000 quite different kinds of structures. And it turns out that this 558 00:40:45,000 --> 00:40:48,000 stereochemistry is extremely important. These molecules function 559 00:40:48,000 --> 00:40:52,000 very differently, one from the other. 560 00:40:52,000 --> 00:40:55,000 And, for example, to the extent that glucose is used 561 00:40:55,000 --> 00:40:59,000 in different kinds of energy metabolism and to the extent that 562 00:40:59,000 --> 00:41:03,000 galactose is not, there must be certain biochemical 563 00:41:03,000 --> 00:41:07,000 mechanisms in which one has catalysts, the catalysts that we 564 00:41:07,000 --> 00:41:11,000 call enzymes that ensure that one can convert one of these hexoses 565 00:41:11,000 --> 00:41:14,000 through an enzyme into, let's say a less useful one into a 566 00:41:14,000 --> 00:41:18,000 more useful one, glucose, which can readily be burnt 567 00:41:18,000 --> 00:41:22,000 up by the energy-generating machinery. Here we've gone yet 568 00:41:22,000 --> 00:41:26,000 another order of magnitude more complex because we've gone from a 569 00:41:26,000 --> 00:41:30,000 monosaccharide, i.e., one or another hexose, 570 00:41:30,000 --> 00:41:34,000 to a disaccharide. And here's common table sugar. 571 00:41:34,000 --> 00:41:38,000 And here you see that it's formed once again through an esterification 572 00:41:38,000 --> 00:41:42,000 reaction, i.e. there is a dehydration reaction 573 00:41:42,000 --> 00:41:46,000 between this hydroxyl here and this hydroxyl here. 574 00:41:46,000 --> 00:41:50,000 And biochemists take the orientation of these hydroxyl and 575 00:41:50,000 --> 00:41:54,000 hydrogen groups very seriously. Now, you can say they're a bit 576 00:41:54,000 --> 00:41:58,000 obsessive. Indeed they probably are. 577 00:41:58,000 --> 00:42:02,000 But, nonetheless, we can admit that the specific 578 00:42:02,000 --> 00:42:07,000 orientations of all these things dictate very importantly the 579 00:42:07,000 --> 00:42:11,000 difference between here, in this case sucrose, and in this 580 00:42:11,000 --> 00:42:16,000 case lactose. Why is this important? Well, this is the sugar in milk 581 00:42:16,000 --> 00:42:20,000 sugar. This is the dominant sugar in milk sugar, 582 00:42:20,000 --> 00:42:25,000 lactose. And half the world, as adults, cannot absorb this. 583 00:42:25,000 --> 00:42:29,000 All kinds of unpleasant things happen when they actually 584 00:42:29,000 --> 00:42:34,000 drink milk. How many people here are lactose 585 00:42:34,000 --> 00:42:38,000 intolerant? It's nothing to be ashamed of. I'm married to a very 586 00:42:38,000 --> 00:42:43,000 lactose intolerant person. She's otherwise very nice. 587 00:42:43,000 --> 00:42:48,000 The fact is that the enzyme to break down lactose, 588 00:42:48,000 --> 00:42:52,000 it's an enzyme which is called lactase. And here we have yet 589 00:42:52,000 --> 00:42:57,000 another nomenclature item. So lactase is the enzyme which 590 00:42:57,000 --> 00:43:02,000 breaks down lactose. And, by the way, 591 00:43:02,000 --> 00:43:06,000 this is just the harbinger of many other enzymes we're going to talk 592 00:43:06,000 --> 00:43:10,000 about in the future that end in A-S-E. Whereas, 593 00:43:10,000 --> 00:43:14,000 carbohydrates, many of them end in O-S-E, as you've already sensed. 594 00:43:14,000 --> 00:43:18,000 So it turns out that the enzyme lactase is made in large amounts by 595 00:43:18,000 --> 00:43:22,000 most mammals very early in life. Why? To be able to breakdown the 596 00:43:22,000 --> 00:43:27,000 milk sugar that comes in their mother's milk. 597 00:43:27,000 --> 00:43:30,000 But once mammals are weaned there's no reason on earth for them to 598 00:43:30,000 --> 00:43:34,000 continue to make lactase, in their stomach for example. 599 00:43:34,000 --> 00:43:38,000 And, as a consequence, in most mammals the production of lactase is 600 00:43:38,000 --> 00:43:42,000 shut down later in life. And for some weird quirk of human 601 00:43:42,000 --> 00:43:46,000 history, a significant proportion of humanity has learned how to retain 602 00:43:46,000 --> 00:43:50,000 the ability to make lactose through adulthood. And, 603 00:43:50,000 --> 00:43:54,000 as a consequence, people can go and have ice cream 604 00:43:54,000 --> 00:43:58,000 until the age of 70, 80 or 90 without becoming very 605 00:43:58,000 --> 00:44:02,000 bloated. And we don't need to get into all 606 00:44:02,000 --> 00:44:06,000 the details, but you can begin to imagine. And what happens is, 607 00:44:06,000 --> 00:44:10,000 therefore, the lactase enzyme is shut down in their stomach. 608 00:44:10,000 --> 00:44:14,000 It depends. Sometimes they lose it at the age of 10 or 15 or 20. 609 00:44:14,000 --> 00:44:18,000 And then, for the rest of their lives, whenever they have a milk 610 00:44:18,000 --> 00:44:22,000 containing product, in fact, my son is also lactose 611 00:44:22,000 --> 00:44:26,000 intolerant. I'm surrounded by these people. Again, 612 00:44:26,000 --> 00:44:30,000 he is otherwise a tolerant person but he's lactose intolerant. 613 00:44:30,000 --> 00:44:33,000 So this lactose molecule will go into the stomach, 614 00:44:33,000 --> 00:44:37,000 it will remain undigested, it will remain a disaccharide 615 00:44:37,000 --> 00:44:40,000 instead of being cleaved into two monosaccharides. 616 00:44:40,000 --> 00:44:44,000 The two monosaccharides are no problem because they can readily be 617 00:44:44,000 --> 00:44:47,000 interconverted. The galactose can be readily 618 00:44:47,000 --> 00:44:51,000 converted into glucose, and glucose is the universal 619 00:44:51,000 --> 00:44:54,000 currency of carbohydrate energy. And so this disaccharide passes 620 00:44:54,000 --> 00:44:58,000 through the stomach unaltered and it gets into the intestines, 621 00:44:58,000 --> 00:45:02,000 in the small intestine and the large intestine. 622 00:45:02,000 --> 00:45:06,000 And it turns out we have more bacterial cells in our gut than we 623 00:45:06,000 --> 00:45:10,000 have our own cells in the rest of the body. Imagine that. 624 00:45:10,000 --> 00:45:14,000 And there are a lot of bacteria that are waiting around in the gut 625 00:45:14,000 --> 00:45:19,000 for just a little gulp of lactose. And they never get it because most 626 00:45:19,000 --> 00:45:23,000 people break down their lactose long before it gets into the intestine. 627 00:45:23,000 --> 00:45:28,000 But here we have these lactose intolerant people. 628 00:45:28,000 --> 00:45:31,000 The disaccharide gets into the gut and the bacteria go to town. 629 00:45:31,000 --> 00:45:35,000 They've been waiting around for years, decades for a little bit of 630 00:45:35,000 --> 00:45:39,000 lactose. And now it finally arrives and they go to town, 631 00:45:39,000 --> 00:45:43,000 ad they start metabolizing it and they ferment and they produce lots 632 00:45:43,000 --> 00:45:46,000 of gas and other kinds of byproducts. And, as a consequence, 633 00:45:46,000 --> 00:45:50,000 this makes people very uncomfortable. Just to show you, 634 00:45:50,000 --> 00:45:54,000 now, the fact is that lactose intolerance people can perfectly 635 00:45:54,000 --> 00:45:58,000 well break down sucrose, obviously. This is one of the great 636 00:45:58,000 --> 00:46:01,000 energy sources from plants. But they cannot break this down. 637 00:46:01,000 --> 00:46:05,000 And I emphasize that point to indicate that the stereochemical 638 00:46:05,000 --> 00:46:09,000 differences between different kinds of carbohydrates makes a very 639 00:46:09,000 --> 00:46:13,000 important difference. An enzyme like sucrase will break 640 00:46:13,000 --> 00:46:17,000 down the sucrose but it will not touch lactose. 641 00:46:17,000 --> 00:46:21,000 So there's a high degree of stereospecificity as it's called in 642 00:46:21,000 --> 00:46:25,000 the trade. Here we now go to another step forward that we're 643 00:46:25,000 --> 00:46:29,000 going to pursue in much greater detail next time. 644 00:46:29,000 --> 00:46:33,000 Because here, for the first time, we talk about polymerization. We're 645 00:46:33,000 --> 00:46:38,000 making polymers. Where the large number of hydroxyl 646 00:46:38,000 --> 00:46:43,000 groups on these monosaccharides affords one many opportunities to 647 00:46:43,000 --> 00:46:48,000 make very long linear aggregates end-to-end like this or even side 648 00:46:48,000 --> 00:46:53,000 branches. If you imagine that each one of these hydroxyls, 649 00:46:53,000 --> 00:46:58,000 in principle, represents a site for possible esterification, 650 00:46:58,000 --> 00:47:03,000 i.e., the formation of a bond to a neighboring side chain. 651 00:47:03,000 --> 00:47:08,000 Here we see these two linear chains and here we see the branch which is 652 00:47:08,000 --> 00:47:13,000 afforded, which is made possible by the availability of these unutilized 653 00:47:13,000 --> 00:47:18,000 hydroxyl side chains which are just waiting around to participate, 654 00:47:18,000 --> 00:47:23,000 if the opportunity allows them, in some kind of esterification 655 00:47:23,000 --> 00:47:28,000 reaction to form a covalent bond. Here is, by the way, glycogen, 656 00:47:28,000 --> 00:47:34,000 which is the way we store a lot of sugar in our liver. 657 00:47:34,000 --> 00:47:38,000 Here's a starch, which is what we get from many 658 00:47:38,000 --> 00:47:43,000 plants. And here's another very interesting polysaccharide. 659 00:47:43,000 --> 00:47:47,000 It's called cellulose. And we cannot digest cellulose, 660 00:47:47,000 --> 00:47:52,000 but termites can. And why they can is something we'll have to wait 661 00:47:52,000 --> 00:47:56,000 until next time to learn about. Have a great weekend. See you on 662 00:47:56,000 --> 00:48:01,000 Monday.