1 00:00:00,000 --> 00:00:04,000 I just got the feedback from the one minute things just a few minutes 2 00:00:04,000 --> 00:00:09,000 before class, so I think I may defer commenting on the couple of them 3 00:00:09,000 --> 00:00:14,000 until the beginning of next lecture. But there are a couple of things 4 00:00:14,000 --> 00:00:19,000 that I think I can say. One is, several people were 5 00:00:19,000 --> 00:00:24,000 wondering, how does the cell decide whether to do mitosis or meiosis? 6 00:00:24,000 --> 00:00:29,000 But the mitosis, which is ordinary cell division is what happens 7 00:00:29,000 --> 00:00:34,000 everywhere in your body, in your intestine, on your skin, 8 00:00:34,000 --> 00:00:39,000 in your eye, anywhere except, since that I you make all the different 9 00:00:39,000 --> 00:00:44,000 cells you have. The meiosis, which creates the sex 10 00:00:44,000 --> 00:00:48,000 sells, or gametes, happens in a very specific place, 11 00:00:48,000 --> 00:00:52,000 either in the testes if you are male or the ovary if you are a female. 12 00:00:52,000 --> 00:00:56,000 So, there's a dedicated place where meiosis takes place, 13 00:00:56,000 --> 00:01:00,000 and just your knowledge of human anatomy and physiology can make a 14 00:01:00,000 --> 00:01:04,000 pretty good guess as to where that is. Everywhere else, it's mitosis. 15 00:01:04,000 --> 00:01:09,000 There's a very special place where that happens. A couple of you still 16 00:01:09,000 --> 00:01:14,000 got confused when I was talking about meiosis and I were showing you 17 00:01:14,000 --> 00:01:20,000 a progression through, and I put a double headed arrow, 18 00:01:20,000 --> 00:01:25,000 meaning that's was with that period was called. The process is 19 00:01:25,000 --> 00:01:31,000 unidirectional. It only goes in one way. 20 00:01:31,000 --> 00:01:36,000 It's not a reversible process. There were some questions about the 21 00:01:36,000 --> 00:01:40,000 chiasmata or the chiasma: why is there a crossover in chiasma in 22 00:01:40,000 --> 00:01:44,000 meiosis but not mitosis? I will tell you about that today 23 00:01:44,000 --> 00:01:48,000 very specifically. Why was there a tall and a short 24 00:01:48,000 --> 00:01:52,000 pair of chromosomes? That was arbitrary. I made up a 25 00:01:52,000 --> 00:01:56,000 simple cell for us to consider these properties in, 26 00:01:56,000 --> 00:02:00,000 one with a long, and what with a short, 27 00:02:00,000 --> 00:02:05,000 nothing else. I wasn't trying to represent any particular organism. 28 00:02:05,000 --> 00:02:08,000 And I'll pick up on a couple of other things. I just want to 29 00:02:08,000 --> 00:02:12,000 quickly mention something. Since I've seen you, I flew out to 30 00:02:12,000 --> 00:02:16,000 San Diego, gave a talk yesterday morning at a major meeting, 31 00:02:16,000 --> 00:02:20,000 hopped on a plane, got back at midnight, and here and again. 32 00:02:20,000 --> 00:02:24,000 As part of being a scientist, come teacher, at a place like MIT, 33 00:02:24,000 --> 00:02:28,000 you guys tend not to see, but my research life goes on 34 00:02:28,000 --> 00:02:31,000 while I'm teaching. And I just want to briefly mentioned 35 00:02:31,000 --> 00:02:34,000 one thing I talked about yesterday, because just in my own life it 36 00:02:34,000 --> 00:02:38,000 captures a couple of things that I've been trying to tell you, 37 00:02:38,000 --> 00:02:41,000 that the textbook is not the ultimate authority. 38 00:02:41,000 --> 00:02:44,000 That's just what we think up until today. A new finding to change the 39 00:02:44,000 --> 00:02:47,000 way you think about things, and what I'm telling you, and some 40 00:02:47,000 --> 00:02:51,000 of your frustrated at, that I'm not just parroting back the 41 00:02:51,000 --> 00:02:54,000 textbook is because this is the way it is. If you guys are going to be 42 00:02:54,000 --> 00:02:57,000 leaders in whatever field you're in, you're going to be dealing with this 43 00:02:57,000 --> 00:03:01,000 process of shifting sands as we gain new knowledge. 44 00:03:01,000 --> 00:03:05,000 So, in fact what I was talking about has some relationship to the cell 45 00:03:05,000 --> 00:03:09,000 cycle that I talked about. Lee Hartwell particularly helped us 46 00:03:09,000 --> 00:03:13,000 understand that there is what's called a G1 phase, 47 00:03:13,000 --> 00:03:17,000 which you could think of as a preparation for DNA synthesis for 48 00:03:17,000 --> 00:03:21,000 what's known as the S-phase where DNA synthesis actually occurs. 49 00:03:21,000 --> 00:03:25,000 And now, you're at 4N. You've doubled the DNA content, 50 00:03:25,000 --> 00:03:29,000 and there's G2 where it cleans up from S-phase, gets ready for mitosis, 51 00:03:29,000 --> 00:03:33,000 and mitosis is what you, then, separate the daughter 52 00:03:33,000 --> 00:03:37,000 chromatids, go back to 2N, and then ultimately the cell divides. 53 00:03:37,000 --> 00:03:40,000 And we are back to 2N. And what we were talking about DNA 54 00:03:40,000 --> 00:03:44,000 replication, I told you how replicative DNA polymerases test for 55 00:03:44,000 --> 00:03:48,000 Watson-Crick shape, and remember that little movie I 56 00:03:48,000 --> 00:03:52,000 showed you where they flipped the base pair into a very narrow slot in 57 00:03:52,000 --> 00:03:56,000 the protein, and they check that it's there. And they said at that 58 00:03:56,000 --> 00:04:00,000 time, that's why polymerases have a problem when they hit a lesion such 59 00:04:00,000 --> 00:04:04,000 as a thymine dimer that we get we go out into the sun. 60 00:04:04,000 --> 00:04:07,000 And then one of the recent pieces of excitement in the DNA repair field 61 00:04:07,000 --> 00:04:11,000 that I work in, was the discovery of a whole class 62 00:04:11,000 --> 00:04:14,000 of translesion DNA polymerases that are very flexible, 63 00:04:14,000 --> 00:04:18,000 active sites and we are able to copy over a lesion. 64 00:04:18,000 --> 00:04:22,000 Right at this point, you will find in the literature all 65 00:04:22,000 --> 00:04:25,000 sorts of reviews about polymerase switching, where people are 66 00:04:25,000 --> 00:04:29,000 envisioning the replicate of polymerase coming along. 67 00:04:29,000 --> 00:04:33,000 It hits a lesion, gets stuck. It recruits one of these translesion 68 00:04:33,000 --> 00:04:37,000 polymerases that comes in, copies of the lesion; it switches 69 00:04:37,000 --> 00:04:42,000 back to the replica of polymerase, [and then it goes?]. And there are 70 00:04:42,000 --> 00:04:46,000 reviews like that coming out in the literature. So, 71 00:04:46,000 --> 00:04:51,000 one of the genes that's needed for this sort of error prone kind of 72 00:04:51,000 --> 00:04:55,000 translesion synthesis in yeast and in humans is a gene called [rev-1? 73 00:04:55,000 --> 00:05:00,000 . You don't have to notice for the exam, this bit. 74 00:05:00,000 --> 00:05:03,000 But if you knock out the function of that gene, the yeast aren't mutated 75 00:05:03,000 --> 00:05:06,000 by UV or chemicals anymore. So, you know it has an essential 76 00:05:06,000 --> 00:05:09,000 function somehow in this process of translesion synthesis. 77 00:05:09,000 --> 00:05:13,000 So, one of our big surprises was I was trying it. 78 00:05:13,000 --> 00:05:16,000 We were trying to actually fish out partners that might interact with it 79 00:05:16,000 --> 00:05:19,000 cause we thought it would be regulated. And we were surprised. 80 00:05:19,000 --> 00:05:23,000 The experiments revealed something we hadn't expected. 81 00:05:23,000 --> 00:05:26,000 We found out that this protein that was critical for mutagenesis was 82 00:05:26,000 --> 00:05:30,000 extremely strongly cell cycle regulated. 83 00:05:30,000 --> 00:05:35,000 Well, given the reviews I've told you, or if somebody you're writing a 84 00:05:35,000 --> 00:05:40,000 textbook today, this is what they would tell you: 85 00:05:40,000 --> 00:05:45,000 polymerase switching during S-phase. So you might have thought it would 86 00:05:45,000 --> 00:05:50,000 be high and S-phase, but it isn't. We can barely detect 87 00:05:50,000 --> 00:05:55,000 it during S-phase. But instead, the rev-1 levels are 88 00:05:55,000 --> 00:06:00,000 at least 50 times in the G2M phase. Actually, it goes right through 89 00:06:00,000 --> 00:06:05,000 this part of the cell cycle, 50 times what they are during 90 00:06:05,000 --> 00:06:09,000 S-phase. And so, there's a couple of 91 00:06:09,000 --> 00:06:13,000 possibilities right now. Either these very tiny amounts that 92 00:06:13,000 --> 00:06:17,000 are doing S-phase are what everybody thinks and current models would 93 00:06:17,000 --> 00:06:21,000 predict: you're getting polymerase switching. And it makes 50 fold 94 00:06:21,000 --> 00:06:24,000 more during this phase for something else. If so, I don't know what that 95 00:06:24,000 --> 00:06:28,000 is. The other possibility is that we have to rethink our model, 96 00:06:28,000 --> 00:06:32,000 and that it isn't polymerase switching during replication. 97 00:06:32,000 --> 00:06:36,000 Actually, the replication for it just keeps moving, 98 00:06:36,000 --> 00:06:39,000 and it leaves behind little masses. And when the cell is busy starting 99 00:06:39,000 --> 00:06:43,000 to line up as chromosomes, and even while it's pulling them 100 00:06:43,000 --> 00:06:46,000 apart, that's when this translesion synthesis stuff comes in, 101 00:06:46,000 --> 00:06:50,000 and it cleans up the damage. Now, I don't know what the right 102 00:06:50,000 --> 00:06:54,000 answer is. That was one of the things I was talking about yesterday 103 00:06:54,000 --> 00:06:57,000 morning. But it's an example of how something that you guys can now 104 00:06:57,000 --> 00:07:01,000 hopefully at least understand in principle is being debated 105 00:07:01,000 --> 00:07:04,000 right now. And the finding from my lab changed 106 00:07:04,000 --> 00:07:08,000 the way I'd been thinking about it at least. I can now see another 107 00:07:08,000 --> 00:07:12,000 very real possibility. So, just to move on, so we are 108 00:07:12,000 --> 00:07:16,000 going back to Mendel now, who did an awful lot more than I 109 00:07:16,000 --> 00:07:20,000 told you. A few of you thought it was pretty frustrating and it had 110 00:07:20,000 --> 00:07:24,000 all that. But Mendel was doing other things. You already know what 111 00:07:24,000 --> 00:07:28,000 he could do. He knew how to do crosses. He knew how to count. 112 00:07:28,000 --> 00:07:32,000 And he could think, which was really important. 113 00:07:32,000 --> 00:07:37,000 And he's our ratios instead of just numbers. So it was another class of 114 00:07:37,000 --> 00:07:42,000 experiment that he could do, and that was he could do a cross 115 00:07:42,000 --> 00:07:48,000 where he looked at more than one trait at once. 116 00:07:48,000 --> 00:07:53,000 And he didn't have all that many options for things he could do, 117 00:07:53,000 --> 00:07:59,000 but he did what are known as dihybrid crosses, 118 00:07:59,000 --> 00:08:04,000 where he followed two traits at once. And I showed you some of the traits 119 00:08:04,000 --> 00:08:10,000 that he studied. In fact, that picture I showed you 120 00:08:10,000 --> 00:08:15,000 is actually a cross that we can think of right now. 121 00:08:15,000 --> 00:08:20,000 He's got smooth, and yellow, wrinkled, and green, and yellow, 122 00:08:20,000 --> 00:08:26,000 and you'll see them in all four combinations. So, 123 00:08:26,000 --> 00:08:31,000 an example of the kind of crust that Mendel carried out, 124 00:08:31,000 --> 00:08:36,000 then, was he took smooth yellow, which actually is the dominant 125 00:08:36,000 --> 00:08:42,000 allele, and [both? , which he learned from his other 126 00:08:42,000 --> 00:08:47,000 crosses. And he crossed it with wrinkled 127 00:08:47,000 --> 00:08:53,000 green, which I'll represent as a little s, little s, 128 00:08:53,000 --> 00:08:58,000 little y, little y, where he previously known the little s and 129 00:08:58,000 --> 00:09:04,000 little y alleles, the wrinkled and green were the 130 00:09:04,000 --> 00:09:09,000 recessive alleles. And then, the F1 generation, 131 00:09:09,000 --> 00:09:13,000 wouldn't be surprising to you at this point, I think, 132 00:09:13,000 --> 00:09:17,000 that they were all smooth, yellow. And, they all were ss yy. 133 00:09:17,000 --> 00:09:22,000 And if you think about the possible gametes you get out of this, 134 00:09:22,000 --> 00:09:26,000 you could only get a big S, big Y out of this one, 135 00:09:26,000 --> 00:09:31,000 and little s, little y out of that one. 136 00:09:31,000 --> 00:09:39,000 So if they came together, it would have to be that. So then, 137 00:09:39,000 --> 00:09:48,000 what he did the self crossed the F1, and what he got out of that was the 138 00:09:48,000 --> 00:09:57,000 kind of mixture of things that he saw there. 139 00:09:57,000 --> 00:10:05,000 He saw smooth yellow, smooth green, wrinkled yellow, 140 00:10:05,000 --> 00:10:13,000 and wrinkled green. In doing the same kind of experiments that we 141 00:10:13,000 --> 00:10:21,000 talked about before, he counted them, he looked to see if 142 00:10:21,000 --> 00:10:30,000 he saw characteristic ratios. He did. 143 00:10:30,000 --> 00:10:36,000 The ratios he saw were 9:3:3:1. So, I think we know how his head 144 00:10:36,000 --> 00:10:42,000 worked at this point. He was try to figure out if he 145 00:10:42,000 --> 00:10:49,000 could explain these results by the kind of model that he was developing 146 00:10:49,000 --> 00:10:55,000 where hereditary information came in, in particles. And he could. 147 00:10:55,000 --> 00:11:02,000 But he had to make a critical assumption. 148 00:11:02,000 --> 00:11:09,000 And if you've just seen the next square going to draw, 149 00:11:09,000 --> 00:11:17,000 without realizing the assumption underlies it, then you've missed a 150 00:11:17,000 --> 00:11:24,000 great deal of his thinking. And that was that the two genes of 151 00:11:24,000 --> 00:11:32,000 sort, or the two traits anyway, because he didn't know they were 152 00:11:32,000 --> 00:11:39,000 genes yet independently. And the way we could see that would 153 00:11:39,000 --> 00:11:46,000 be to think about what were the kind of gametes that you could make from 154 00:11:46,000 --> 00:11:54,000 those F1s. So, we could get a big S and a big Y 155 00:11:54,000 --> 00:12:01,000 from here, or a big S and a little y, or a little s and a big Y, 156 00:12:01,000 --> 00:12:08,000 or a little s and a little y. And, since this is [selfing? 157 00:12:08,000 --> 00:12:16,000 , it's the same thing. So I won't fill this whole thing in, 158 00:12:16,000 --> 00:12:23,000 but we get two S's, two big Y's here. Down here we'd have little s, 159 00:12:23,000 --> 00:12:31,000 little y like that. I'll fill in a couple up here where we've got big S, 160 00:12:31,000 --> 00:12:37,000 big S, big Y, and a little Y. Here we have big S, 161 00:12:37,000 --> 00:12:42,000 big S, but two little Y's. Here we'd have big S, little s, 162 00:12:42,000 --> 00:12:47,000 big Y little y. And over here we'd have big S, little S, 163 00:12:47,000 --> 00:12:52,000 two little y's. So, if you were to make out [then? 164 00:12:52,000 --> 00:12:57,000 a table or a chart like this that showed the phenotypes, 165 00:12:57,000 --> 00:13:03,000 you'll find that all of these wild type, we can see it here. 166 00:13:03,000 --> 00:13:07,000 However, this one would be smooth. But it's got the two alleles. So 167 00:13:07,000 --> 00:13:12,000 it would be green. This one would be smooth and yellow. 168 00:13:12,000 --> 00:13:17,000 And this, again, would be smooth but green. 169 00:13:17,000 --> 00:13:22,000 And down on the corner it is the wrinkled green. 170 00:13:22,000 --> 00:13:26,000 And if you follow that out, draw out the rest of that, you'll 171 00:13:26,000 --> 00:13:31,000 discover there the 9:3:3:1 ratios. That was what Mendel observed in 172 00:13:31,000 --> 00:13:36,000 all of his experiments. But he was particularly bothered by 173 00:13:36,000 --> 00:13:42,000 it because he'd shown particular information. The fact [they sorted? 174 00:13:42,000 --> 00:13:48,000 randomly wasn't an issue. However, that was before people knew about 175 00:13:48,000 --> 00:13:54,000 the chromosomes, which we spent quite a bit of time 176 00:13:54,000 --> 00:14:00,000 talking about the other day. As I said, when people saw those 177 00:14:00,000 --> 00:14:06,000 chromosomes that gave rise to what's known as the chromosomal 178 00:14:06,000 --> 00:14:11,000 theory of inheritance. And what was interesting about 179 00:14:11,000 --> 00:14:16,000 chromosomal theory of inheritance was that it predicted a different 180 00:14:16,000 --> 00:14:20,000 outcome depending on whether the traits you were studying were 181 00:14:20,000 --> 00:14:25,000 encoded by genes on the same chromosome or by genes on different 182 00:14:25,000 --> 00:14:30,000 chromosomes. Now, as it happened, what I think Mendel 183 00:14:30,000 --> 00:14:35,000 did was he found traits that were well behaved and he could study. 184 00:14:35,000 --> 00:14:40,000 And those all happened to be on separate chromosomes. 185 00:14:40,000 --> 00:14:45,000 So, his results didn't disclose this issue that was raised by the 186 00:14:45,000 --> 00:14:50,000 discovery of chromosomes. The chromosomal theory of 187 00:14:50,000 --> 00:14:56,000 inheritance gives, as I said, predicts different 188 00:14:56,000 --> 00:15:01,000 outcomes depending whether things are on the same or different 189 00:15:01,000 --> 00:15:08,000 chromosomes. So let's consider that by taking the 190 00:15:08,000 --> 00:15:16,000 F1. So, say they are on separate chromosomes. And let's take the F1 191 00:15:16,000 --> 00:15:25,000 from the previous cross over here. So, big S., little s, big Y, little 192 00:15:25,000 --> 00:15:34,000 y, and then we'll cross it with the homozygous recessive parent. 193 00:15:34,000 --> 00:15:38,000 That was a cross that I mentioned the first lecture was very important. 194 00:15:38,000 --> 00:15:42,000 It's important enough that it's given a special name. 195 00:15:42,000 --> 00:15:46,000 It's called a test across. Well, here we are using it here. 196 00:15:46,000 --> 00:15:51,000 Well what are the possible outcomes that could come from this sort of 197 00:15:51,000 --> 00:15:55,000 thing? Well, I think the way you could think about it most easily is, 198 00:15:55,000 --> 00:16:00,000 what kind of gametes or sex cells could we get out of this? 199 00:16:00,000 --> 00:16:05,000 Well, from here we could get a big S and a big Y. Or, 200 00:16:05,000 --> 00:16:10,000 we could get a big S. and the little y, a little S and a 201 00:16:10,000 --> 00:16:15,000 big Y, or a little S and a little y. So, we could get four different 202 00:16:15,000 --> 00:16:21,000 types of sex cells. The gametes we can get out of this 203 00:16:21,000 --> 00:16:26,000 sign, there's only one type. So, if we start combining those, 204 00:16:26,000 --> 00:16:32,000 I think you can see what the outcome would be. 205 00:16:32,000 --> 00:16:38,000 It's so simple. We don't even need to draw out the 206 00:16:38,000 --> 00:16:44,000 square. If we had big S, big Y over, they're all going to be 207 00:16:44,000 --> 00:16:50,000 over. Well actually, I'll draw up this way because I 208 00:16:50,000 --> 00:16:56,000 think it's a little easier to see. So, there would be four possible 209 00:16:56,000 --> 00:17:02,000 things that would come out of this test cross. 210 00:17:02,000 --> 00:17:06,000 This would be the smooth and yellow. Here would be, what have I done 211 00:17:06,000 --> 00:17:11,000 wrong here? No, this is right. This should be 212 00:17:11,000 --> 00:17:16,000 smooth and green. This would be wrinkled and yellow. 213 00:17:16,000 --> 00:17:21,000 And this would be wrinkled and green. And, do you see what the 214 00:17:21,000 --> 00:17:26,000 ratio would be? It would be 1:1:1:1 because we have 215 00:17:26,000 --> 00:17:31,000 an equal probability of making any of those. 216 00:17:31,000 --> 00:17:36,000 And, I'm going to rearrange these because the way that it'll help us 217 00:17:36,000 --> 00:17:41,000 think about it, this is one of the types that we've 218 00:17:41,000 --> 00:17:46,000 found in the original cross. That's a parental phenotype, 219 00:17:46,000 --> 00:17:52,000 smooth and yellow. It was one of the parents up there. 220 00:17:52,000 --> 00:17:57,000 This is the other one that looks like one of the original parents. 221 00:17:57,000 --> 00:18:03,000 So, I can divide these into parental or nonparental phenotypes. 222 00:18:03,000 --> 00:18:09,000 These are 1:1, and then these others were ones 223 00:18:09,000 --> 00:18:16,000 where the progeny differed from the parent. And they're all 1:1:1:1. 224 00:18:16,000 --> 00:18:22,000 Now, that's what the chromosomal theory of inheritance would predict 225 00:18:22,000 --> 00:18:29,000 if they were on separate chromosomes. That's what Mendel saw when he was 226 00:18:29,000 --> 00:18:36,000 doing his crosses. What if they were on the same 227 00:18:36,000 --> 00:18:44,000 chromosome? So, we are going to have to go back to 228 00:18:44,000 --> 00:18:52,000 the original cross now to think this one through. So, 229 00:18:52,000 --> 00:19:00,000 what Mendel started with was a smooth, yellow parent. 230 00:19:00,000 --> 00:19:05,000 So that was SYSY. But because these are on the same 231 00:19:05,000 --> 00:19:10,000 chromosome, I'm going to depict them this way so we can see they're going 232 00:19:10,000 --> 00:19:15,000 to travel as a unit. So that was then crossed with the 233 00:19:15,000 --> 00:19:20,000 wrinkled green, which would be a little s, 234 00:19:20,000 --> 00:19:25,000 little y. In each case, [UNINTELLIGIBLE] should be F1 in 235 00:19:25,000 --> 00:19:30,000 this case will be all smooth and yellow. 236 00:19:30,000 --> 00:19:33,000 The recessive traits disappear, but this time they're only, what the 237 00:19:33,000 --> 00:19:37,000 progeny will have, they will have gotten one of the 238 00:19:37,000 --> 00:19:41,000 possible alleles from this one, which would be the SY on the same 239 00:19:41,000 --> 00:19:45,000 chromosome, and one from the other parent, the little s, 240 00:19:45,000 --> 00:19:48,000 little y again on the same chromosome and one from the other 241 00:19:48,000 --> 00:19:52,000 parent, the little s and y, again, on the same chromosome. 242 00:19:52,000 --> 00:19:56,000 So now if you start to ask, what will happen if I do a test cross, 243 00:19:56,000 --> 00:20:00,000 you're going to get a different outcome. So here's the test 244 00:20:00,000 --> 00:20:04,000 cross in this case. So, we've got this F1. 245 00:20:04,000 --> 00:20:08,000 It's smooth and yellow, but it's actually at the chromosomal 246 00:20:08,000 --> 00:20:12,000 level now. It's like this, and we're crossing it with the 247 00:20:12,000 --> 00:20:17,000 homozygous recessive parent that's now going to look like that. 248 00:20:17,000 --> 00:20:21,000 So if you think through, what kind of gametes could we get out of this? 249 00:20:21,000 --> 00:20:25,000 Well, there's only two possibilities. 250 00:20:25,000 --> 00:20:30,000 We could get this one or this one. 251 00:20:30,000 --> 00:20:36,000 And over here, the kind of gametes we could get, 252 00:20:36,000 --> 00:20:43,000 there's only one type. So, what are we going to get out of this cross? 253 00:20:43,000 --> 00:20:50,000 What we'll end up getting is big SY, over the little sy, 254 00:20:50,000 --> 00:20:57,000 or little sy over the little sy like that. That's smooth and yellow, 255 00:20:57,000 --> 00:21:04,000 wrinkled and green, the ratio of these 1:1. 256 00:21:04,000 --> 00:21:06,000 But you see the difference from what we saw before? 257 00:21:06,000 --> 00:21:08,000 These are the parental phenotypes. 258 00:21:08,000 --> 00:21:22,000 The chromosomal theory of 259 00:21:22,000 --> 00:21:26,000 inheritance doesn't predict that you will get, or it predicts that you 260 00:21:26,000 --> 00:21:30,000 will not get the nonparental phenotypes. So, 261 00:21:30,000 --> 00:21:34,000 if you wanted to distinguish between these two hypotheses, 262 00:21:34,000 --> 00:21:38,000 and figure out where your genes were, you'd do the experiment. 263 00:21:38,000 --> 00:21:42,000 And what happened when this was done, again, what often happens in 264 00:21:42,000 --> 00:21:46,000 science, you think you've got it straightened out. 265 00:21:46,000 --> 00:21:50,000 You got hypothesis A and hypothesis B, and you do experiment planning to 266 00:21:50,000 --> 00:21:54,000 do the scientific method and show it. And you get a result that isn't 267 00:21:54,000 --> 00:21:58,000 what you expected with either model. And that's in fact what happened in 268 00:21:58,000 --> 00:22:03,000 this case. And it led to the discovery of 269 00:22:03,000 --> 00:22:07,000 genetic recombination. And to show you actually the 270 00:22:07,000 --> 00:22:11,000 experiments where that was discovered, I'm going to switch to 271 00:22:11,000 --> 00:22:15,000 another widely used genetic model, which is the Drosophila melanogaster, 272 00:22:15,000 --> 00:22:20,000 or the fruit fly, which you see in the summer around 273 00:22:20,000 --> 00:22:24,000 rotting fruit. Or if you're in the biology 274 00:22:24,000 --> 00:22:28,000 building, one is apt to land on your sandwich because there's just a few 275 00:22:28,000 --> 00:22:33,000 stragglers that get out of the Drosophila genetics labs. 276 00:22:33,000 --> 00:22:37,000 But the one thing you can see from this is the eyes, 277 00:22:37,000 --> 00:22:41,000 pretty cool. It's got red. The wild type is a red eye, 278 00:22:41,000 --> 00:22:45,000 and the body's brown. And, you can see the red eyes. 279 00:22:45,000 --> 00:22:50,000 If you look at a fruit fly carefully, you'll be able to see, 280 00:22:50,000 --> 00:22:54,000 the summer if you take a look, you'll see that they have red eyes. 281 00:22:54,000 --> 00:22:58,000 So, they've been a very useful model organism for genetics partly 282 00:22:58,000 --> 00:23:03,000 because they grow pretty fast and they are easy to handle in a lab. 283 00:23:03,000 --> 00:23:09,000 And so, I'll introduce you to a couple of features. 284 00:23:09,000 --> 00:23:16,000 So, the wild type you find in nature is a brown body. 285 00:23:16,000 --> 00:23:23,000 We'll call it a plus, and it has normal wings, and which I'll refer 286 00:23:23,000 --> 00:23:30,000 to as plus. And some mutant phenotypes that geneticists have 287 00:23:30,000 --> 00:23:37,000 been able to find is a black body which I'll refer to as little b. 288 00:23:37,000 --> 00:23:42,000 And vestigial wings, which I'll refer to as VG. 289 00:23:42,000 --> 00:23:47,000 So, these are fairly easy to score. They look like little tiny wings. 290 00:23:47,000 --> 00:23:53,000 It's fairly easy if you're crossing Drosophila, and that looking at 291 00:23:53,000 --> 00:23:58,000 progeny to go through and score, what color are their eyes? And do 292 00:23:58,000 --> 00:24:04,000 they have ordinary wings or little wings? 293 00:24:04,000 --> 00:24:08,000 So, this is the kind of cross that was carried out. 294 00:24:08,000 --> 00:24:12,000 We are going to switch now to an organism that has male and female. 295 00:24:12,000 --> 00:24:16,000 Up until now, plants are both. They make pollen, 296 00:24:16,000 --> 00:24:20,000 and they have the eggs that are going to develop into the seeds once 297 00:24:20,000 --> 00:24:24,000 they're fertilized. But, Drosophila are more like us. 298 00:24:24,000 --> 00:24:28,000 They come in males and females. So, we're going to have to specify which 299 00:24:28,000 --> 00:24:32,000 is which. And I think most of you are probably familiar with 300 00:24:32,000 --> 00:24:37,000 this terminology. This is the symbol geneticists use 301 00:24:37,000 --> 00:24:41,000 for female. And this is the one that is used for male. 302 00:24:41,000 --> 00:24:46,000 So, in this case, let's set up exactly the same kind of thing that 303 00:24:46,000 --> 00:24:51,000 we start here. We're going to cross a homozygous 304 00:24:51,000 --> 00:24:55,000 parent versus a homozygous recessive parent. That's just exactly the 305 00:24:55,000 --> 00:25:00,000 kind of thing we have up here. But I'm going to do at this time 306 00:25:00,000 --> 00:25:05,000 using Drosophila genetics speak. And so, we'll be taking female whose 307 00:25:05,000 --> 00:25:10,000 wild type for both traits, we're going to cross with a male 308 00:25:10,000 --> 00:25:15,000 that's homozygous recessive for both traits. This is the way Drosophila 309 00:25:15,000 --> 00:25:21,000 geneticists tend to represent this kind of thing. 310 00:25:21,000 --> 00:25:26,000 So it's exactly the same kind of cross we got before. 311 00:25:26,000 --> 00:25:31,000 And at this point, what we get out of the F1, it shouldn't 312 00:25:31,000 --> 00:25:36,000 be news for you. You can see genetically what it's 313 00:25:36,000 --> 00:25:41,000 going to be. They'll have to get one allele from here, 314 00:25:41,000 --> 00:25:45,000 one allele from there. So, by definition, the only 315 00:25:45,000 --> 00:25:50,000 possibility that you can get out of this, the F1s, 316 00:25:50,000 --> 00:25:55,000 will all have one allele dominant, and one recessive allele just like 317 00:25:55,000 --> 00:26:00,000 up there. And this will be, since the wild type is the dominant 318 00:26:00,000 --> 00:26:05,000 allele, this will be brown and normal, and normal wings. 319 00:26:05,000 --> 00:26:12,000 And then, at this point they then will set up a test cross, 320 00:26:12,000 --> 00:26:19,000 exactly the same idea. We're going to take the F1. 321 00:26:19,000 --> 00:26:26,000 And in this case, we'll take a female whose got this, 322 00:26:26,000 --> 00:26:34,000 and we'll cross her with a male who is homozygous recessive. 323 00:26:34,000 --> 00:26:40,000 So that will be black over black, and vestigial over vestigial. And 324 00:26:40,000 --> 00:26:47,000 out of this, there are four possibilities. 325 00:26:47,000 --> 00:26:54,000 We can get parental phenotypes. So, there will be, from that, black 326 00:26:54,000 --> 00:27:00,000 over, if you look to the various combinations of how these things 327 00:27:00,000 --> 00:27:07,000 could go together, you'll find we can get vestigial 328 00:27:07,000 --> 00:27:13,000 plus. Or, we can get black over black, 329 00:27:13,000 --> 00:27:17,000 and vestigial over vestigial. For example, this one, 330 00:27:17,000 --> 00:27:21,000 coming from those two getting together, and this one coming from 331 00:27:21,000 --> 00:27:25,000 this one and this one getting together. So this is just exactly 332 00:27:25,000 --> 00:27:30,000 the same kind of thing we've done but done using Drosophila traits. 333 00:27:30,000 --> 00:27:38,000 And then, nonparental, so now we get, for example, 334 00:27:38,000 --> 00:27:46,000 black over black, and vestigial over plus, black but normal wings, 335 00:27:46,000 --> 00:27:54,000 or we could have black over plus, vestigial over vestigial, which 336 00:27:54,000 --> 00:28:02,000 would be a brown body, but with vestigial wings. 337 00:28:02,000 --> 00:28:06,000 So, if we were trying to do this kind of cross, 338 00:28:06,000 --> 00:28:11,000 we are doing this kind of cross, and we are trying to see what the 339 00:28:11,000 --> 00:28:15,000 outcome would be, Mendel, every trait [assorts? 340 00:28:15,000 --> 00:28:20,000 independently would predict the 1:1:1:1. And the chromosomal theory 341 00:28:20,000 --> 00:28:24,000 of inheritance would predict we'd get 1:1 here, and we wouldn't see 342 00:28:24,000 --> 00:28:29,000 those at all. Instead, what happened when this experiment 343 00:28:29,000 --> 00:28:34,000 was done where numbers that didn't really fit. 344 00:28:34,000 --> 00:28:39,000 This part works pretty well. These are numbers from an 345 00:28:39,000 --> 00:28:45,000 experiment of this type. So these are pretty close to 1:1. 346 00:28:45,000 --> 00:28:50,000 That's OK. That fits with both of the models. The surprise is over 347 00:28:50,000 --> 00:28:56,000 here where there is [2/6 to 185? . So, these are in the ballpark of 348 00:28:56,000 --> 00:29:02,000 1:1. But what you can see is the result is not what was predicted 349 00:29:02,000 --> 00:29:06,000 by the model. This is the kind of thing I've sort 350 00:29:06,000 --> 00:29:09,000 of been trying to tell you through the course. It keeps happening in 351 00:29:09,000 --> 00:29:13,000 biology. It's not a QED sort of thing where you can work it out by 352 00:29:13,000 --> 00:29:16,000 logic. Very often, you do an experiment, 353 00:29:16,000 --> 00:29:19,000 you get a result that doesn't fit within your current framework. 354 00:29:19,000 --> 00:29:23,000 And then you have to go back and redo your thinking. 355 00:29:23,000 --> 00:29:26,000 So what was going on here, as it turned out, and it all got 356 00:29:26,000 --> 00:29:30,000 sorted out, was scientists had just discovered genetic recombination. 357 00:29:30,000 --> 00:29:40,000 And here is where, what was going on. So when we 358 00:29:40,000 --> 00:29:50,000 talked about Meiosis I, and we had duplicated the DNA, 359 00:29:50,000 --> 00:30:00,000 so we now had to chromatids, and I showed you the chiasma when it was 360 00:30:00,000 --> 00:30:11,000 drying, it looked sort of like this. 361 00:30:11,000 --> 00:30:15,000 And, I said that you always sought these physical attachments that once 362 00:30:15,000 --> 00:30:19,000 the homologous pairs were duplicated, they would always be in contact. 363 00:30:19,000 --> 00:30:23,000 And I said there was actually a physical interaction going on there. 364 00:30:23,000 --> 00:30:27,000 Well what was going on in there was an exchange, a recombination event 365 00:30:27,000 --> 00:30:31,000 at the DNA level that's just exactly equivalent to what was happening 366 00:30:31,000 --> 00:30:35,000 when I showed you the phage cross. 367 00:30:35,000 --> 00:30:41,000 Remember, we had a phage cross, and if we got a recombination in 368 00:30:41,000 --> 00:30:47,000 between the two genes, then we could get progeny that were 369 00:30:47,000 --> 00:30:53,000 a mixture of the two traits. So, if we were plus plus, for 370 00:30:53,000 --> 00:30:59,000 example, these are on the same chromosome. And the other one is 371 00:30:59,000 --> 00:31:06,000 like this, black, vestigial, black, and vestigial. 372 00:31:06,000 --> 00:31:10,000 If we get a genetic recombination going on here where these two 373 00:31:10,000 --> 00:31:15,000 intersect and recombine in between these two genes, 374 00:31:15,000 --> 00:31:20,000 what you get out of that, then, is this chromatid is still the 375 00:31:20,000 --> 00:31:24,000 same. It's got both wild type alleles. But in this case, 376 00:31:24,000 --> 00:31:29,000 now, the black allele has moved from here to the tip of this one, 377 00:31:29,000 --> 00:31:34,000 pairing it with that. And the other chromatid over here, 378 00:31:34,000 --> 00:31:39,000 the other homologous pair, now has the plus together with the vestigial 379 00:31:39,000 --> 00:31:45,000 here and then here. So, if you, then, draw out the 380 00:31:45,000 --> 00:31:50,000 possible gametes one will look like one parent. One will look like the 381 00:31:50,000 --> 00:31:55,000 other parent. This one can give rise to a nonparental phenotype in a 382 00:31:55,000 --> 00:32:01,000 test cross. And that one can give rise to a nonparental phenotype 383 00:32:01,000 --> 00:32:07,000 and a test cross. And that's what's going on in this 384 00:32:07,000 --> 00:32:14,000 experiment I've described. But the nice thing about this since 385 00:32:14,000 --> 00:32:22,000 this sort of thing is happening is one can calculate, 386 00:32:22,000 --> 00:32:29,000 then, a recombination frequency in just the same way that we calculated 387 00:32:29,000 --> 00:32:36,000 it when we were doing phage cross. And in this case, 388 00:32:36,000 --> 00:32:44,000 it was the recombinants, which in this context I'm referring 389 00:32:44,000 --> 00:32:52,000 to the nonparentals, the recombinants over the total of 390 00:32:52,000 --> 00:33:00,000 the parental types and the nonparental. 391 00:33:00,000 --> 00:33:05,000 So in this case, this would be 206 plus 185 over 965 392 00:33:05,000 --> 00:33:11,000 plus 944 plus 206 plus 185. And if I haven't blown the 393 00:33:11,000 --> 00:33:16,000 arithmetic, that would be a recombination frequency of 17%. 394 00:33:16,000 --> 00:33:22,000 Now, we were back talking about that phage cross. 395 00:33:22,000 --> 00:33:27,000 Remember, we did a pair of crosses between gene one and two, 396 00:33:27,000 --> 00:33:33,000 and between two and three, and then we were trying to figure 397 00:33:33,000 --> 00:33:39,000 out if they were in the linear order, how we could explain it. 398 00:33:39,000 --> 00:33:43,000 And we finally worked out the order by crossing allele one and three. 399 00:33:43,000 --> 00:33:48,000 And we made a little genetic map that could show the order of gene 1, 400 00:33:48,000 --> 00:33:52,000 2, and 3, based on nothing more than the recombination frequency. 401 00:33:52,000 --> 00:33:57,000 So, that's exactly what people were able to do by this kind 402 00:33:57,000 --> 00:34:02,000 of measurement. And that, then, 403 00:34:02,000 --> 00:34:07,000 led to the generation of chromosome maps. This is a publication from 404 00:34:07,000 --> 00:34:12,000 Science in 1994. This is before the human genome was 405 00:34:12,000 --> 00:34:16,000 done. And they were mapping a kind of genetic marker that we'll talk 406 00:34:16,000 --> 00:34:21,000 about [when?] we do restriction enzymes. But they were able to 407 00:34:21,000 --> 00:34:26,000 associate it with [banning? patterns they had seen on the 408 00:34:26,000 --> 00:34:31,000 chromosome. This is the sort of thing that 409 00:34:31,000 --> 00:34:36,000 cytologists saw, and as scientists were working this 410 00:34:36,000 --> 00:34:41,000 out, then they were able to associate these genetic maps of loci, 411 00:34:41,000 --> 00:34:46,000 and begin to associate them with the physical maps of banning patterns 412 00:34:46,000 --> 00:34:51,000 [in?] chromosomes. Now we have the sort of ultimate 413 00:34:51,000 --> 00:34:56,000 genetic map, which is the sequence of the human chromosomes. 414 00:34:56,000 --> 00:35:01,000 So now we know exactly, to the base pair, how far different genes are. 415 00:35:01,000 --> 00:35:05,000 Part of the way that the human genome was assembled from all these 416 00:35:05,000 --> 00:35:09,000 little tiny fragments of DNA that were sequenced were taking advantage 417 00:35:09,000 --> 00:35:13,000 of these kind of maps that told the scientists assembling all these 418 00:35:13,000 --> 00:35:17,000 little fragments of DNA sequence what order they had to be in, 419 00:35:17,000 --> 00:35:21,000 what part of the chromosome they were on, and that kind of thing. 420 00:35:21,000 --> 00:35:25,000 There is, this, then, leads us, though, to other issues since I've 421 00:35:25,000 --> 00:35:29,000 now started to talk about chromosomes. And one more thing, 422 00:35:29,000 --> 00:35:33,000 let me just say before I leave this. So, from this kind of thing, 423 00:35:33,000 --> 00:35:39,000 if the recombination frequency is much less than 50%, 424 00:35:39,000 --> 00:35:45,000 then they're on the same chromosome. And the word geneticists use to 425 00:35:45,000 --> 00:35:51,000 describe this is they say genes are linked. If the recombination 426 00:35:51,000 --> 00:35:57,000 frequency is 50%, then they are on different 427 00:35:57,000 --> 00:36:01,000 chromosomes. At this point, 428 00:36:01,000 --> 00:36:05,000 it's just random assortment. [You go?] one way or the other [as 429 00:36:05,000 --> 00:36:09,000 you get?] a number of 50% if you do this kind of calculation. 430 00:36:09,000 --> 00:36:13,000 And these are referred to as unlinked. And those of you who are 431 00:36:13,000 --> 00:36:16,000 thinking about it can probably imagine that there might be a 432 00:36:16,000 --> 00:36:20,000 problem, that if you had a very long chromosome, so the two genes you are 433 00:36:20,000 --> 00:36:24,000 studying were very far apart, you might get so many recombination 434 00:36:24,000 --> 00:36:28,000 events in between that it would begin to look, 435 00:36:28,000 --> 00:36:32,000 the recombination frequency might come close to 50%. 436 00:36:32,000 --> 00:36:36,000 And you would perhaps have a difficult time in that genetic cross 437 00:36:36,000 --> 00:36:41,000 telling whether the genes are really unlinked. They were on separate 438 00:36:41,000 --> 00:36:45,000 chromosomes, or they were linked but very far apart. 439 00:36:45,000 --> 00:36:50,000 So this kind of thing could be a little hard to resolve that kind of 440 00:36:50,000 --> 00:36:55,000 situation. But there are other things you can do to look at that. 441 00:36:55,000 --> 00:36:59,000 So, the chromosomes we've been talking about are what are 442 00:36:59,000 --> 00:37:04,000 known as autosomes. These are identical pairs. 443 00:37:04,000 --> 00:37:10,000 But there's an exception. And those are the genes that are 444 00:37:10,000 --> 00:37:16,000 involved in sex determination. It's the chromosomes that are 445 00:37:16,000 --> 00:37:22,000 involved in sex determination. These are known as heterozomes. 446 00:37:22,000 --> 00:37:28,000 And, they're on this picture that I showed you where they used this 447 00:37:28,000 --> 00:37:34,000 technique of chromosome painting to show it. 448 00:37:34,000 --> 00:37:40,000 You can see how all these autosomes are in identical pairs. 449 00:37:40,000 --> 00:37:46,000 But this is a male, obviously, because there's the Y-chromosome, 450 00:37:46,000 --> 00:37:52,000 and there is an X. If you're a female, you'd have two copies of the 451 00:37:52,000 --> 00:37:58,000 X, something I think most of you know. So, if we think about how 452 00:37:58,000 --> 00:38:04,000 this works in humans, females have two X's, and males have 453 00:38:04,000 --> 00:38:10,000 an X and a Y. In Drosophila, 454 00:38:10,000 --> 00:38:16,000 the fruit fly, it's the same thing. Males have two X. Females have two 455 00:38:16,000 --> 00:38:21,000 X's, and males have an XY. But there isn't anything magic in 456 00:38:21,000 --> 00:38:26,000 nature about females having two of the same, and males having one of 457 00:38:26,000 --> 00:38:32,000 each because in birds where it's different enough they use 458 00:38:32,000 --> 00:38:38,000 different notation. The females have one of each. 459 00:38:38,000 --> 00:38:44,000 And let me make sure I got my notation right. 460 00:38:44,000 --> 00:38:50,000 I think it's ZZ, excuse me. And the females have one 461 00:38:50,000 --> 00:38:56,000 of each. So, nature tends to use these differences as far 462 00:38:56,000 --> 00:39:01,000 as sex determination. And this, then, 463 00:39:01,000 --> 00:39:06,000 poses a new kind of problem. And that is, what would happen if 464 00:39:06,000 --> 00:39:10,000 you were doing a cross, and the allele that you are studying 465 00:39:10,000 --> 00:39:15,000 happened to be a sex chromosome instead of one of these? 466 00:39:15,000 --> 00:39:20,000 You might guess that since females have two of one and males have one 467 00:39:20,000 --> 00:39:24,000 of each that I would not give the results that are predicted by what 468 00:39:24,000 --> 00:39:29,000 we've talked about so far. And so, this led to the discovery 469 00:39:29,000 --> 00:39:35,000 of what's known as sex linkage. And that's important. 470 00:39:35,000 --> 00:39:41,000 And in fact, as you'll see in a minute, affects stuff that we are 471 00:39:41,000 --> 00:39:47,000 familiar with in our lives. I want to just quickly introduce 472 00:39:47,000 --> 00:39:53,000 you to this, and show you how it was discovered. It was done by Thomas 473 00:39:53,000 --> 00:39:59,000 Morgan in 1910 actually, this discovery. What he was doing 474 00:39:59,000 --> 00:40:05,000 was he took a white eyed male, crossed it with a red eyed female 475 00:40:05,000 --> 00:40:11,000 wild type, and yet the expected result that the F1s 476 00:40:11,000 --> 00:40:18,000 were all red eye. But then when he took the F1 female, 477 00:40:18,000 --> 00:40:25,000 which was red, and crossed it with a red eyed male, 478 00:40:25,000 --> 00:40:32,000 you got something that was very puzzling at the time. 479 00:40:32,000 --> 00:40:37,000 The females were all red. The males, half of them had red 480 00:40:37,000 --> 00:40:42,000 eyes, and half of them had white eyes. If you followed the logic up 481 00:40:42,000 --> 00:40:47,000 until now, where you try to work this out, you would find that you 482 00:40:47,000 --> 00:40:52,000 couldn't generate this pattern by the stuff that we've talked about 483 00:40:52,000 --> 00:40:57,000 now. So once again, this led to the need to create a new 484 00:40:57,000 --> 00:41:03,000 model, something that expanded our thinking. 485 00:41:03,000 --> 00:41:07,000 So, the way the thinking went was, well, there must be something to do 486 00:41:07,000 --> 00:41:11,000 with the sex of the fruit fly in this. And so, 487 00:41:11,000 --> 00:41:15,000 here was the hypothesis, and that was that the white eyed 488 00:41:15,000 --> 00:41:20,000 male had this genotype. They had an allele that caused the 489 00:41:20,000 --> 00:41:24,000 white eyeness. But it was located on the X 490 00:41:24,000 --> 00:41:28,000 chromosome so that the male would have had a Y chromosome 491 00:41:28,000 --> 00:41:34,000 paired with that. And, the red eyed female used in the 492 00:41:34,000 --> 00:41:40,000 first cross would have a wild type allele on both X chromosomes. 493 00:41:40,000 --> 00:41:46,000 And so, if that were the model, what's going to happen to them when 494 00:41:46,000 --> 00:41:53,000 we do this cross that we've described here? 495 00:41:53,000 --> 00:41:59,000 Well, let's think it through. So, we've got female whose X plus. 496 00:41:59,000 --> 00:42:09,000 We're crossing with the male who's 497 00:42:09,000 --> 00:42:21,000 got the X with the white allele over the Y. So, the females can either 498 00:42:21,000 --> 00:42:34,000 be, they'll get an X plus XW, and the males, yeah, right. 499 00:42:34,000 --> 00:42:40,000 The males are going to get, they will get this allele for Y. 500 00:42:40,000 --> 00:42:46,000 So now, if he takes us red eyed female, that was the F1 from the 501 00:42:46,000 --> 00:42:52,000 cross up here, which will be this, 502 00:42:52,000 --> 00:42:58,000 and crossed with a red eyed male. Now, that means the male has to 503 00:42:58,000 --> 00:43:05,000 have the good allele. What are we going to get? 504 00:43:05,000 --> 00:43:11,000 Well, for the females in this cross, we've got a couple of possibilities. 505 00:43:11,000 --> 00:43:17,000 This one, we could get just the wild type female back, 506 00:43:17,000 --> 00:43:23,000 or we could get this one pairing with this one, 507 00:43:23,000 --> 00:43:30,000 which will give us this. So, these are all red that fit. 508 00:43:30,000 --> 00:43:34,000 But, the males, then, if you see what happens, 509 00:43:34,000 --> 00:43:38,000 they have to have, each have to have a Y, and then they can either get 510 00:43:38,000 --> 00:43:42,000 this allele or that allele. If they get this allele, they're 511 00:43:42,000 --> 00:43:47,000 red. If this allele, they're white. If you stand back 512 00:43:47,000 --> 00:43:51,000 and look at that, you will see that is the outcome 513 00:43:51,000 --> 00:43:55,000 that was observed. Females were all red. 514 00:43:55,000 --> 00:44:00,000 The males are half red, half white. 515 00:44:00,000 --> 00:44:06,000 Well, this is a characteristic of, this would be an X-linked trait. 516 00:44:06,000 --> 00:44:12,000 And I want to just point out one thing. This female, 517 00:44:12,000 --> 00:44:18,000 excuse me, wrong female. This female here is what's referred 518 00:44:18,000 --> 00:44:24,000 to as a carrier. She's got this allele that causes a 519 00:44:24,000 --> 00:44:30,000 white guy, but she's not expressing it herself. 520 00:44:30,000 --> 00:44:34,000 But she's able to transmit it to her sons. And when she has progeny, 521 00:44:34,000 --> 00:44:39,000 on average, half of her sons will have the trait. 522 00:44:39,000 --> 00:44:43,000 And now, X-linked traits, there are a number of them that we 523 00:44:43,000 --> 00:44:48,000 know about. Some of you may know hemophilia. Queen Victoria was a 524 00:44:48,000 --> 00:44:53,000 carrier of this gene causing hemophilia, where there is a problem 525 00:44:53,000 --> 00:44:57,000 with the clotting mechanism. And if you get a cut, then you can 526 00:44:57,000 --> 00:45:02,000 bleed a lot. So, some of her sons had this. 527 00:45:02,000 --> 00:45:06,000 A more common one, which has to apply to some people in this room, 528 00:45:06,000 --> 00:45:10,000 is red-green color blindness. If you're a male, 529 00:45:10,000 --> 00:45:15,000 you have a much higher probability of being colorblind because it's an 530 00:45:15,000 --> 00:45:19,000 X-linked trait. And I want to just close by showing 531 00:45:19,000 --> 00:45:23,000 you how human geneticists think about the sort of thing. 532 00:45:23,000 --> 00:45:28,000 And we have to think about things differently if we are doing human 533 00:45:28,000 --> 00:45:32,000 genetics because as most of you know, I think all of us would be very 534 00:45:32,000 --> 00:45:37,000 uncooperative subjects in a kind of genetic cross that a fruit fly 535 00:45:37,000 --> 00:45:41,000 geneticist [or most? geneticists would like to have us 536 00:45:41,000 --> 00:45:45,000 do, in which we'd be put in a cage with a member of the other 537 00:45:45,000 --> 00:45:49,000 sex and say, mate. That was your choice in life. 538 00:45:49,000 --> 00:45:53,000 Well, that would be a different kind of existence for us all. 539 00:45:53,000 --> 00:45:56,000 So, human geneticists don't have that luxury of having pure breeding 540 00:45:56,000 --> 00:46:00,000 strains and doing controlled crosses. 541 00:46:00,000 --> 00:46:04,000 We all have very strong feelings about the kind of crosses that we 542 00:46:04,000 --> 00:46:08,000 want to engage in. And so, what they have to do, 543 00:46:08,000 --> 00:46:12,000 they have to make use with what they find. And they use a couple of 544 00:46:12,000 --> 00:46:16,000 symbols here that I'll just show you. They look at pedigrees, 545 00:46:16,000 --> 00:46:21,000 and then they look for patterns. And, they use a little shorthand 546 00:46:21,000 --> 00:46:25,000 for doing this. Males are squares, 547 00:46:25,000 --> 00:46:29,000 which I don't know if there's any symbolism to that or not, 548 00:46:29,000 --> 00:46:33,000 but if they are affected they show it as a shaded square, 549 00:46:33,000 --> 00:46:38,000 and unaffected as an open symbol. So, affected males are solid squares. 550 00:46:38,000 --> 00:46:43,000 Affected females are solid circles. So, let's take a look at the sort 551 00:46:43,000 --> 00:46:47,000 of pedigree that human geneticists might see. And let's consider 552 00:46:47,000 --> 00:46:52,000 something. Let's consider red-green color blindness, 553 00:46:52,000 --> 00:46:57,000 which is an X-linked trait. So, let's take a male, which there 554 00:46:57,000 --> 00:47:02,000 is probably one in this room at least, maybe more, who have this. 555 00:47:02,000 --> 00:47:06,000 So, since the colorblindness trait is on the X chromosome since he's a 556 00:47:06,000 --> 00:47:10,000 male, the other pair will be Y. That means if you're a male and 557 00:47:10,000 --> 00:47:14,000 you've got it, you're going to display the 558 00:47:14,000 --> 00:47:18,000 phenotypes. So this is, George, let's say, who is colorblind. 559 00:47:18,000 --> 00:47:22,000 They leave a lot of the romance out of these things, 560 00:47:22,000 --> 00:47:26,000 as you'll see, who had progeny with Mary. Let's say, 561 00:47:26,000 --> 00:47:30,000 they got married after they graduated from MIT. 562 00:47:30,000 --> 00:47:35,000 It was very happy. They had a, let's see, 563 00:47:35,000 --> 00:47:41,000 son. He had to get the Y from dad. So, he had to get a good allele 564 00:47:41,000 --> 00:47:48,000 from his mother. But they also had a daughter, 565 00:47:48,000 --> 00:47:55,000 and she had to get the color blindness allele on an X chromosome 566 00:47:55,000 --> 00:48:02,000 because the dad only had one of them, and then a good one from her mom. 567 00:48:02,000 --> 00:48:08,000 So at this point, everybody's normal. 568 00:48:08,000 --> 00:48:15,000 But you'll notice, this daughter has this trait of being a carrier 569 00:48:15,000 --> 00:48:21,000 because even though she doesn't display the trait herself, 570 00:48:21,000 --> 00:48:28,000 she's got it in her genome. So, let's say, [UNINTELLIGIBLE 571 00:48:28,000 --> 00:48:35,000 PHRASE], a woman who doesn't have any colorblindness allele. 572 00:48:35,000 --> 00:48:39,000 So, if we have, let's say, a daughter, 573 00:48:39,000 --> 00:48:43,000 and a son, a daughter, and a son, this is not much happening over on 574 00:48:43,000 --> 00:48:48,000 the part of the pedigree. Everybody would be normal. 575 00:48:48,000 --> 00:48:52,000 Yeah, did I miss something? Pardon? Oh, it's over Y. Excuse 576 00:48:52,000 --> 00:48:57,000 me, yep, I'm going too fast here. Over Y, here we go. I don't need 577 00:48:57,000 --> 00:49:01,000 to introduce any genetic abnormalities on top of what we're 578 00:49:01,000 --> 00:49:06,000 already trying to do here. This is complicated enough. 579 00:49:06,000 --> 00:49:10,000 OK, so what happens, let's say then that the daughter 580 00:49:10,000 --> 00:49:14,000 that married a guy, and they had four children. 581 00:49:14,000 --> 00:49:18,000 I'm going to help us with the genetics of it, 582 00:49:18,000 --> 00:49:22,000 from the geneticist, that sort of a perfect family in 583 00:49:22,000 --> 00:49:26,000 this case would be four kids representing all four possibilities. 584 00:49:26,000 --> 00:49:30,000 And so, first off let's think what would happen with the daughters. 585 00:49:30,000 --> 00:49:37,000 Well, the daughters could either have the colorblindness allele 586 00:49:37,000 --> 00:49:45,000 paired with this one. Or, they could get a wild type 587 00:49:45,000 --> 00:49:52,000 allele with this one. So actually, I'd better put this in. 588 00:49:52,000 --> 00:50:00,000 So this is a daughter. So this would be [CB?] over plus, 589 00:50:00,000 --> 00:50:06,000 or it could be plus over plus. This one would, 590 00:50:06,000 --> 00:50:12,000 again, be a carrier. Now, with the sons, they're both 591 00:50:12,000 --> 00:50:18,000 going to get the Y since they're male. But there's a possibility of 592 00:50:18,000 --> 00:50:24,000 either getting the good allele, which means he'll be unaffected. 593 00:50:24,000 --> 00:50:30,000 But, if you get the other one, he'll be affected. 594 00:50:30,000 --> 00:50:33,000 Now, this would be sort of a typical pedigree. And you realize, 595 00:50:33,000 --> 00:50:36,000 depending on the number of kids, you might or might not see this. 596 00:50:36,000 --> 00:50:39,000 But this, you're going to get to do some more of these and to do some 597 00:50:39,000 --> 00:50:42,000 other traits. But let me just sort of point out, if you're a human 598 00:50:42,000 --> 00:50:45,000 geneticist, what you would recognize here, the trait's more frequent in 599 00:50:45,000 --> 00:50:48,000 males. The frequency of color blindness is about 8% on the X 600 00:50:48,000 --> 00:50:51,000 chromosome. So, if you're a female, 601 00:50:51,000 --> 00:50:54,000 you've got to have two of them. So that means, you've got 0.64% 602 00:50:54,000 --> 00:50:57,000 because you've got to get two together. It's a much smaller 603 00:50:57,000 --> 00:51:01,000 probability. The trait skips a generation, [you'd often say?]. 604 00:51:01,000 --> 00:51:04,000 You see it here. You see here. But you don't see it 605 00:51:04,000 --> 00:51:08,000 in between, and that's because you have this carrier. 606 00:51:08,000 --> 00:51:11,000 The affected males don't transmit to their sons because what they give 607 00:51:11,000 --> 00:51:15,000 to their sons is the Y. So, they [kept giving?] the 608 00:51:15,000 --> 00:51:18,000 colorblindness thing. And then, the heterozygous females 609 00:51:18,000 --> 00:51:22,000 who are carriers will transmit the trait to their sons about half the 610 00:51:22,000 --> 00:51:25,000 time. And that's a pattern that a human geneticist would look for. 611 00:51:25,000 --> 00:51:29,000 And they'd say, ah-ha, it must be an X-linked trait. 612 00:51:29,000 --> 00:51:33,000 And you'll see in your problem sets and [recitation? 613 00:51:33,000 --> 00:51:36,000 sections are the patterns. OK, I'll see you on Friday.