1 00:00:00,000 --> 00:00:04,000 And, we're going to make a major shift. You're going to feel like 2 00:00:04,000 --> 00:00:09,000 this is a whole different class compared to what we were talking 3 00:00:09,000 --> 00:00:14,000 about last time, because were jumping from the 4 00:00:14,000 --> 00:00:19,000 biogeochemical cycles, or looking at the biosphere as 5 00:00:19,000 --> 00:00:23,000 essentially a large biochemical machine, to studying individual 6 00:00:23,000 --> 00:00:28,000 populations of organisms, and the communities that they make 7 00:00:28,000 --> 00:00:33,000 up when they come together. So, before we were really talking 8 00:00:33,000 --> 00:00:38,000 about organisms as they function in the biosphere. 9 00:00:38,000 --> 00:00:44,000 Mentally, we're grinding them all up and thinking of them as a 10 00:00:44,000 --> 00:00:49,000 collective biochemistry basically. And now we are going to stop 11 00:00:49,000 --> 00:00:54,000 grinding them up, mentally, and think of them as 12 00:00:54,000 --> 00:00:59,000 individual organisms. So, the next series of lectures, 13 00:00:59,000 --> 00:01:05,000 we're going to talk about population ecology. 14 00:01:05,000 --> 00:01:12,000 If you remember the first lecture I gave we talked about the hierarchy 15 00:01:12,000 --> 00:01:19,000 of organization within ecological systems, and then we are going to 16 00:01:19,000 --> 00:01:26,000 talk about competition between organisms with a population, 17 00:01:26,000 --> 00:01:33,000 and between organisms of different species, and were going to talk 18 00:01:33,000 --> 00:01:40,000 about predation, and mutualism. These are all interactions between 19 00:01:40,000 --> 00:01:47,000 organisms that affect the fitness of organisms. And then we'll, 20 00:01:47,000 --> 00:01:54,000 at the end, talk about community structure. So this is sort of the 21 00:01:54,000 --> 00:02:01,000 outline for the rest of my lectures, not for this lecture. 22 00:02:01,000 --> 00:02:11,000 So, today we are going to talk about properties of populations. 23 00:02:11,000 --> 00:02:22,000 We're going to analyze how we measure growth rate, 24 00:02:22,000 --> 00:02:32,000 growth and death in populations, and this will include populations 25 00:02:32,000 --> 00:02:43,000 that have an age structure, and populations that don't. 26 00:02:43,000 --> 00:02:47,000 And this is all in preparation for the next lecture where we will talk 27 00:02:47,000 --> 00:02:52,000 about human population growth. So, in this field of population 28 00:02:52,000 --> 00:02:56,000 ecology, which is as I told you in the first lecture, 29 00:02:56,000 --> 00:03:01,000 and some universities you could take three courses in population ecology, 30 00:03:01,000 --> 00:03:06,000 and you could get a Ph.D. in population ecology. 31 00:03:06,000 --> 00:03:11,000 I mean, this is a whole field that we're going to cover in two lectures. 32 00:03:11,000 --> 00:03:16,000 But what population ecologists worry about fundamentally, 33 00:03:16,000 --> 00:03:21,000 well, they don't worry about it. This is what they study, is what 34 00:03:21,000 --> 00:03:27,000 regulates the density of populations? Obviously, it's a function of how 35 00:03:27,000 --> 00:03:32,000 fast they're growing, the birth rate, and how fast they're 36 00:03:32,000 --> 00:03:37,000 dying, the death rate. But what are the factors that 37 00:03:37,000 --> 00:03:41,000 actually influence those rates? Is it competition with other 38 00:03:41,000 --> 00:03:45,000 organisms? Is it the entire structure of the community? 39 00:03:45,000 --> 00:03:49,000 Is it the availability of food? Is it the various abiotic 40 00:03:49,000 --> 00:03:53,000 properties of the environment: temperature, etc. 41 00:03:53,000 --> 00:03:57,000 So, they analyze these and basically try to model the 42 00:03:57,000 --> 00:04:02,000 population growth as a function of these various parameters. 43 00:04:02,000 --> 00:04:06,000 The other questions they ask, is how are populations distributed 44 00:04:06,000 --> 00:04:10,000 in the environment? Are they clustered? 45 00:04:10,000 --> 00:04:14,000 Are they evenly distributed? This has specific meanings about 46 00:04:14,000 --> 00:04:19,000 their ecology. And, the other thing that people 47 00:04:19,000 --> 00:04:23,000 are really fascinated by, which is a really tough question, 48 00:04:23,000 --> 00:04:27,000 is why are some species' populations extremely abundant, while 49 00:04:27,000 --> 00:04:32,000 others are rare? And one of the discussions we always 50 00:04:32,000 --> 00:04:36,000 have in my lab, we work on an organism that's 51 00:04:36,000 --> 00:04:40,000 extremely abundant, this prochlorococcus, 52 00:04:40,000 --> 00:04:44,000 which I told you briefly about, is the most abundant photosynthetic 53 00:04:44,000 --> 00:04:49,000 cell on the planet. So, my students tend to keep saying 54 00:04:49,000 --> 00:04:53,000 why is it so successful? And I keep saying, it's successful 55 00:04:53,000 --> 00:04:57,000 but there are thousands of other species who are also successful. 56 00:04:57,000 --> 00:05:02,000 Abundance does not equal success. Endurance equals success. 57 00:05:02,000 --> 00:05:07,000 If you're here in the next generation, you're successful. 58 00:05:07,000 --> 00:05:13,000 If you're not, if your species is disappearing, then you're not 59 00:05:13,000 --> 00:05:19,000 successful. So, speaking of abundance, 60 00:05:19,000 --> 00:05:25,000 let's talk about how we measure abundance, population ecologists. 61 00:05:25,000 --> 00:05:30,000 And this is just one example. Obviously, for microorganisms, 62 00:05:30,000 --> 00:05:35,000 or some microorganisms it's really easy because they're tiny relative 63 00:05:35,000 --> 00:05:40,000 to their habitats. So for the prochlorococcus that we 64 00:05:40,000 --> 00:05:44,000 work on, there are 10^5 cells per milliliter. So, 65 00:05:44,000 --> 00:05:49,000 we can go take a milliliter of water and measure how many cells there. 66 00:05:49,000 --> 00:05:54,000 But for some organisms, larger ones, that are widely distributed, 67 00:05:54,000 --> 00:05:59,000 it's not that easy. So, one method is mark and recapture. 68 00:05:59,000 --> 00:06:04,000 That's used a lot for things like birds and butterflies. 69 00:06:04,000 --> 00:06:09,000 For a bird, the mark would be putting a band on the bird. 70 00:06:09,000 --> 00:06:14,000 For a butterfly, they often take a magic marker and put a mark on the 71 00:06:14,000 --> 00:06:19,000 wing. Well, that's largely what they do. You try to mark 72 00:06:19,000 --> 00:06:24,000 individuals in some way that would not influence their survivorship 73 00:06:24,000 --> 00:06:29,000 rate. So, if N equals the population size, 74 00:06:29,000 --> 00:06:34,000 that is, that's our unknown, what we're going to do is capture, 75 00:06:34,000 --> 00:06:39,000 say, for butterflies or moths, you use a butterfly net, or moths 76 00:06:39,000 --> 00:06:44,000 you can use a light to track them; for birds, you put up these big mist 77 00:06:44,000 --> 00:06:49,000 nets. They fly into them; they get tangled up a little bit but they 78 00:06:49,000 --> 00:06:54,000 don't get hurt. Then you band them, 79 00:06:54,000 --> 00:06:59,000 and that we let them go. That's the way you mark them. 80 00:06:59,000 --> 00:07:07,000 So, we're going to say n1 equals the total number of marked individuals 81 00:07:07,000 --> 00:07:15,000 released. So you capture them, you mark them, you release them. 82 00:07:15,000 --> 00:07:24,000 n2 is equal to, and then you go out sometime later and you recapture as 83 00:07:24,000 --> 00:07:32,000 many individuals as you can find, and this would be the total number 84 00:07:32,000 --> 00:07:41,000 [SIREN] that doesn't sound like a fire drill, does it? 85 00:07:41,000 --> 00:07:50,000 I assume we're good to go here. So, n2 is the total number of 86 00:07:50,000 --> 00:08:00,000 recaptured. And we're going to say m2 is equal to the numbers 87 00:08:00,000 --> 00:08:09,000 recaptured that are marked. OK, and then we assume that the 88 00:08:09,000 --> 00:08:18,000 fraction of the recaptured that are marked represent the fraction in the 89 00:08:18,000 --> 00:08:27,000 total population that was marked. So, we say m2 over n2 is equal to 90 00:08:27,000 --> 00:08:34,000 n1 over N. And the number that we're looking 91 00:08:34,000 --> 00:08:40,000 for, population size, is equal to n1, n2 divided by m2. 92 00:08:40,000 --> 00:08:45,000 So, of course, this assumes that there's no effect of the marking of 93 00:08:45,000 --> 00:08:51,000 the individuals. It assumes that there's no bias in 94 00:08:51,000 --> 00:08:56,000 the trapping for the marked or not marked individuals. 95 00:08:56,000 --> 00:09:02,000 There's all kinds of assumptions that underlie this. 96 00:09:02,000 --> 00:09:07,000 It's a start for assessing the population size. 97 00:09:07,000 --> 00:09:13,000 OK, so how do we measure population growth? We're going to first start 98 00:09:13,000 --> 00:09:19,000 with looking at populations that have age structure. 99 00:09:19,000 --> 00:09:25,000 Now, I hope you printed out the slides that were on the Web, 100 00:09:25,000 --> 00:09:31,000 because I'm depending on these overheads a lot for this lecture 101 00:09:31,000 --> 00:09:37,000 because we wouldn't get through any of it if I wrote all this 102 00:09:37,000 --> 00:09:44,000 stuff on the board. So, we're going to talk about 103 00:09:44,000 --> 00:09:53,000 populations that have an age structure. And the data I'm going 104 00:09:53,000 --> 00:10:03,000 to show you here is for human populations. 105 00:10:03,000 --> 00:10:12,000 But this applies to any population that has differential birth and 106 00:10:12,000 --> 00:10:21,000 death rates as a function of the age of the organism, 107 00:10:21,000 --> 00:10:30,000 OK? So, in these populations if birth rate and death rate are high, 108 00:10:30,000 --> 00:10:40,000 the population is dominated by young people. 109 00:10:40,000 --> 00:11:00,000 And, we'll look at this in a minute. And, if B and D are low, 110 00:11:00,000 --> 00:11:06,000 dominated by old people, or older I should say, since I now 111 00:11:06,000 --> 00:11:12,000 fit into the old category. OK, so here's a typical population 112 00:11:12,000 --> 00:11:19,000 age distribution for developed countries, where each slice here, 113 00:11:19,000 --> 00:11:25,000 these are females on the right, males on the left, 114 00:11:25,000 --> 00:11:32,000 and each slice is an age category: zero to 10 years, 10 to 20. 115 00:11:32,000 --> 00:11:36,000 And you can see that in these kinds of populations, 116 00:11:36,000 --> 00:11:41,000 you have a fairly even age distribution. Long periods of no 117 00:11:41,000 --> 00:11:45,000 net growth in a population lead to this. In these developed countries, 118 00:11:45,000 --> 00:11:50,000 and we're going to examine why this is, there's basically an even 119 00:11:50,000 --> 00:11:55,000 replacement rate of children for adults. And one of the things we 120 00:11:55,000 --> 00:11:59,000 worry about when you see this kind of age distribution, 121 00:11:59,000 --> 00:12:04,000 although it's good in terms of population growth, 122 00:12:04,000 --> 00:12:09,000 is when you have few young people and a lot of older people, 123 00:12:09,000 --> 00:12:13,000 who's going to take care of them, which is what's behind the Social 124 00:12:13,000 --> 00:12:18,000 Security crisis. But we won't get into that. 125 00:12:18,000 --> 00:12:23,000 Since you're the young people and I'm the old people, 126 00:12:23,000 --> 00:12:28,000 I don't want to dwell on that. OK, so what demographers do for 127 00:12:28,000 --> 00:12:33,000 human populations is project what the population will look like in the 128 00:12:33,000 --> 00:12:38,000 future based on the reproductive rates of the present. 129 00:12:38,000 --> 00:12:42,000 And you can see for the US here, it's reasonably stable if you look 130 00:12:42,000 --> 00:12:47,000 at these three snapshots. We're going to go backwards 131 00:12:47,000 --> 00:12:52,000 starting with 1950, and show you what the population has 132 00:12:52,000 --> 00:12:57,000 been doing since 1950. And I'm just going to walk through 133 00:12:57,000 --> 00:13:02,000 this. You only have one in your handouts, but I'll show you how it's 134 00:13:02,000 --> 00:13:07,000 moving along. Moving along, you can think of this 135 00:13:07,000 --> 00:13:13,000 as generations moving through the population. And this is the date up 136 00:13:13,000 --> 00:13:19,000 here. So, this is 1950, 1955, you can see this red cohort. 137 00:13:19,000 --> 00:13:25,000 A cohort is a group of individuals that were born at roughly the same 138 00:13:25,000 --> 00:13:31,000 time. So, you can see that red cohort there. And we are going 139 00:13:31,000 --> 00:13:37,000 along, 1965. This lip here, that we can now see, is the postwar 140 00:13:37,000 --> 00:13:42,000 baby boom. That's what I'm a member of. 141 00:13:42,000 --> 00:13:47,000 If you can see it in this bulge in this population. 142 00:13:47,000 --> 00:13:53,000 And now were marching along. Here's my cohort, and I just put 143 00:13:53,000 --> 00:13:58,000 these lines on to keep you oriented. And here comes you guys. I think 144 00:13:58,000 --> 00:14:03,000 those are you guys, 1985. That's roughly right, 145 00:14:03,000 --> 00:14:09,000 because I never know when I've last updated these slides. 146 00:14:09,000 --> 00:14:14,000 So, and here you go. See, here's the big bulge of all of 147 00:14:14,000 --> 00:14:19,000 these baby boomers that you guys are going to have to take care of. 148 00:14:19,000 --> 00:14:24,000 And now, we can actually see an echo. This is what's called the 149 00:14:24,000 --> 00:14:29,000 baby boom echo. These are the kids of the baby 150 00:14:29,000 --> 00:14:34,000 boomers, which is you guys. But you can only see that as we 151 00:14:34,000 --> 00:14:40,000 march through it. So, here we are at 2020. 152 00:14:40,000 --> 00:14:46,000 But you get the impression that it's a fairly stable, 153 00:14:46,000 --> 00:14:52,000 now, even age distribution in the US and these developed countries. 154 00:14:52,000 --> 00:14:58,000 Oops, here we go a little but more. Sorry. 2035, 2045, OK. 155 00:14:58,000 --> 00:15:03,000 Now, in less developed countries, the birth rate's high and the death 156 00:15:03,000 --> 00:15:09,000 rate's low. We see a much different age distribution. 157 00:15:09,000 --> 00:15:14,000 And here's Uganda, with a very high reproductive rate 158 00:15:14,000 --> 00:15:20,000 showing the projections to 2050. And here, we can march through from 159 00:15:20,000 --> 00:15:25,000 1970. You can see that this huge expansion, do you know what that 160 00:15:25,000 --> 00:15:31,000 noise is? OK. Does anybody have a hypothesis for 161 00:15:31,000 --> 00:15:37,000 what that noise is that we could test? 162 00:15:37,000 --> 00:15:40,000 Oh, OK, I guess we can't do anything about that. OK, 163 00:15:40,000 --> 00:15:44,000 so here's Uganda. And you can see the dramatic 164 00:15:44,000 --> 00:15:48,000 difference in a population where there is large birthrates, 165 00:15:48,000 --> 00:15:52,000 and reducing death rates. And we're going to get into analyzing that in 166 00:15:52,000 --> 00:15:56,000 the next lecture. I just want to show you this here 167 00:15:56,000 --> 00:16:00,000 so you have a feeling for what we are talking about in age 168 00:16:00,000 --> 00:16:04,000 structured populations. So, let's now look at how are going 169 00:16:04,000 --> 00:16:09,000 to analyze these populations to try to quantify growth rates or 170 00:16:09,000 --> 00:16:14,000 replacement rates. And to do this, we set up life 171 00:16:14,000 --> 00:16:19,000 tables. And this is basically what insurance agencies do for human 172 00:16:19,000 --> 00:16:24,000 populations. But we do the same thing for populations of ecological 173 00:16:24,000 --> 00:16:30,000 interests. We use the same techniques. 174 00:16:30,000 --> 00:16:34,000 In this lecture, going to use a unicorn is my example, 175 00:16:34,000 --> 00:16:39,000 because I can make up the numbers because they don't exist. 176 00:16:39,000 --> 00:16:44,000 But in a textbook there are examples for real organisms like 177 00:16:44,000 --> 00:16:49,000 lizards and things like that. OK, so we need to define an age 178 00:16:49,000 --> 00:16:54,000 interval, X, and then this is the number of intervals in the original 179 00:16:54,000 --> 00:16:59,000 cohort. Again, a cohort is a group of individuals 180 00:16:59,000 --> 00:17:04,000 that are born within a defined age interval. 181 00:17:04,000 --> 00:17:08,000 I mean, I think of you guys as a cohort. DX is the number dying 182 00:17:08,000 --> 00:17:13,000 during that interval. All of this is on the Web. 183 00:17:13,000 --> 00:17:18,000 These slides are on the Web. So, you don't need to write it down, 184 00:17:18,000 --> 00:17:23,000 but you can. And, NX is that number of individuals 185 00:17:23,000 --> 00:17:28,000 surviving to age X. LX is the portion of individuals 186 00:17:28,000 --> 00:17:33,000 surviving to age X. So, that's just equal to NX divided 187 00:17:33,000 --> 00:17:39,000 by N0. And, we're going to look at a table that shows this in a minute. 188 00:17:39,000 --> 00:17:45,000 And MX is something that's measured. It's the per capita 189 00:17:45,000 --> 00:17:51,000 births during age interval X to X plus one. And this is also called 190 00:17:51,000 --> 00:17:57,000 age-specific fecundity. And you can think of it as the 191 00:17:57,000 --> 00:18:03,000 number of female offspring produced per female in a particular 192 00:18:03,000 --> 00:18:11,000 age category. OK, is everybody comfortable with 193 00:18:11,000 --> 00:18:21,000 that? So, with these definitions, we're going to build a life table 194 00:18:21,000 --> 00:18:31,000 that will allow us to actually calculate some things of interest. 195 00:18:31,000 --> 00:18:37,000 And, what do we want to calculate? We want to calculate the 196 00:18:37,000 --> 00:18:50,000 survivorship probability, 197 00:18:50,000 --> 00:19:02,000 LX. We want to calculate the net replacement rate. 198 00:19:02,000 --> 00:19:10,000 No it's not really a rate, net replacement of population per 199 00:19:10,000 --> 00:19:19,000 generation, which we are calling R0. It's basically the number of 200 00:19:19,000 --> 00:19:27,000 children people have to replace who's there per generation. 201 00:19:27,000 --> 00:19:36,000 And then, for now, this is what we are going to look at. 202 00:19:36,000 --> 00:19:48,000 And to do that, we are going to generate what's 203 00:19:48,000 --> 00:20:00,000 called a cohort life table. And to do this, we follow a cohort 204 00:20:00,000 --> 00:20:11,000 of individuals throughout lifetime. Or, we can also generate a static 205 00:20:11,000 --> 00:20:19,000 life table because it's not that easy sometimes to have a group of 206 00:20:19,000 --> 00:20:27,000 organisms that are born at the same time to follow them throughout their 207 00:20:27,000 --> 00:20:34,000 entire lifetime. So there is a static life table of 208 00:20:34,000 --> 00:20:40,000 taking a snapshot at one time of the population, and calculating the age 209 00:20:40,000 --> 00:20:47,000 structure. So, you take a snapshot, 210 00:20:47,000 --> 00:20:53,000 and we look at the age structure. And, we are going to do this in a 211 00:20:53,000 --> 00:21:00,000 second so it will make more sense. OK, so we've defined our terms. 212 00:21:00,000 --> 00:21:06,000 And now, we are going to start by calculating LX. 213 00:21:06,000 --> 00:21:13,000 So, this is a cohort life table for unicorns. We're going to start out 214 00:21:13,000 --> 00:21:19,000 with a hundred baby unicorns that we have in our imaginary unicorn pen. 215 00:21:19,000 --> 00:21:26,000 So, this is a cohort size of 100. And, we find that after a year there 216 00:21:26,000 --> 00:21:34,000 are 50 of them left. 50 of them die in the first year. 217 00:21:34,000 --> 00:21:42,000 So, the probability here, the proportion surviving is 0. 218 00:21:42,000 --> 00:21:50,000 , NX over N0, and then a year later, .4, .3, and then by four years older, 219 00:21:50,000 --> 00:21:58,000 no unicorns left. They don't live very long. 220 00:21:58,000 --> 00:22:06,000 All right, so this is what's called the survivorship probability, 221 00:22:06,000 --> 00:22:12,000 and what we can do is look at there. Different types of organisms have 222 00:22:12,000 --> 00:22:16,000 different, what we call, survivorship curves. And this is 223 00:22:16,000 --> 00:22:20,000 discussed in your textbook. We'll just describe the extremes. 224 00:22:20,000 --> 00:22:25,000 These are just theoretical survivorship curves. 225 00:22:25,000 --> 00:22:29,000 But some organisms have a very high probability of survival as a 226 00:22:29,000 --> 00:22:34,000 function of age until they reach an old age. 227 00:22:34,000 --> 00:22:40,000 And then, they have a very low probability of survival. 228 00:22:40,000 --> 00:22:46,000 There are other organisms whose survivorship probability drops very 229 00:22:46,000 --> 00:22:53,000 fast, right after they're born. But if they make it through that 230 00:22:53,000 --> 00:22:59,000 interval, they're pretty good to go. And then there are some that have a 231 00:22:59,000 --> 00:23:08,000 steady probability of dying. So, where are humans, 232 00:23:08,000 --> 00:23:20,000 do you think, on this? Two? No, but that's OK. 233 00:23:20,000 --> 00:23:32,000 Let me ask you the other way; where our frogs, do you think? 234 00:23:32,000 --> 00:23:37,000 Yeah, OK, so you got that image. Tons of frogs' eggs: everybody eats 235 00:23:37,000 --> 00:23:42,000 them. Or for that matter, the video I showed towards the end 236 00:23:42,000 --> 00:23:47,000 of the last class where there were all those eggs of, 237 00:23:47,000 --> 00:23:53,000 what was that? Remember all those eggs that everybody was eating? 238 00:23:53,000 --> 00:23:58,000 Herring, thank you. So, any organism that puts out just tons of 239 00:23:58,000 --> 00:24:03,000 fertilized eggs, and knowing that most of them will 240 00:24:03,000 --> 00:24:09,000 be eaten, but some of them will survive, falls here. 241 00:24:09,000 --> 00:24:14,000 And, humans actually fall here. Any organism that has a high 242 00:24:14,000 --> 00:24:19,000 investment in the care of offspring, they have few offspring but they 243 00:24:19,000 --> 00:24:24,000 invest a lot into the care of those offspring, would fall here. 244 00:24:24,000 --> 00:24:30,000 And then this, actually birds and things fall here. 245 00:24:30,000 --> 00:24:34,000 So, here's some real but idealized survivorship curves. 246 00:24:34,000 --> 00:24:38,000 These are humans. And males and females are different. 247 00:24:38,000 --> 00:24:42,000 I'm not sure whether we understand that completely yet. 248 00:24:42,000 --> 00:24:46,000 Does anybody know whether that's socially constructed? 249 00:24:46,000 --> 00:24:51,000 Now that there's more women experiencing equal stress in the 250 00:24:51,000 --> 00:24:55,000 workplace as there are men that will probably even out. 251 00:24:55,000 --> 00:24:59,000 But, I think there are more women born, or girl babies. 252 00:24:59,000 --> 00:25:03,000 Anyway, there's some interesting biology behind this, 253 00:25:03,000 --> 00:25:07,000 but I don't know. I don't remember. 254 00:25:07,000 --> 00:25:11,000 And, here's grass, of course grass spew out all these 255 00:25:11,000 --> 00:25:14,000 seeds everywhere, and very few of them survive, 256 00:25:14,000 --> 00:25:18,000 also these frogs, etc. and birds are commonly like this, 257 00:25:18,000 --> 00:25:22,000 where they're somewhere in between. Why do we care so much about 258 00:25:22,000 --> 00:25:25,000 survivorship curves? Who cares? Well, I mean they're 259 00:25:25,000 --> 00:25:29,000 inherently interesting to population ecologists, but there are 260 00:25:29,000 --> 00:25:33,000 also uses for them. For example, if you want to conserve 261 00:25:33,000 --> 00:25:38,000 a species, if you're worried about a species going extinct, 262 00:25:38,000 --> 00:25:44,000 you want to figure out whether it's better to conserve the young ones or 263 00:25:44,000 --> 00:25:49,000 the old ones. For example, turtle species, you would pick a 264 00:25:49,000 --> 00:25:54,000 certain age group where the probability of survival is high, 265 00:25:54,000 --> 00:26:00,000 and decide to target the conservation of that age group. 266 00:26:00,000 --> 00:26:05,000 So, let's continue with, we are building our life table here. 267 00:26:05,000 --> 00:26:11,000 So, we have the survivorship probability, but what we really want 268 00:26:11,000 --> 00:26:17,000 to get at is understanding whether or not the population that we are 269 00:26:17,000 --> 00:26:23,000 describing is replacing itself with each generation. 270 00:26:23,000 --> 00:26:29,000 So, maybe we should define, when R0 is equal to one, that meets 271 00:26:29,000 --> 00:26:35,000 the population is exactly replacing itself. 272 00:26:35,000 --> 00:26:45,000 So, this is replacing, so the actual growth rate of the 273 00:26:45,000 --> 00:26:55,000 population would be steady. If R0 is less than one, the number 274 00:26:55,000 --> 00:27:02,000 of individuals is declining. And R0 of greater than one, 275 00:27:02,000 --> 00:27:08,000 it's increasing. So, we want to know for our unicorns what that is. 276 00:27:08,000 --> 00:27:14,000 And to get to that, we have to know something about the birth rates. 277 00:27:14,000 --> 00:27:20,000 So, MX is the average offspring per female of age X. 278 00:27:20,000 --> 00:27:26,000 So, this is called the age-specific fecundity. And that's something 279 00:27:26,000 --> 00:27:32,000 that's a known property of the population. 280 00:27:32,000 --> 00:27:41,000 Whoops, oh, my, my, my, my, I'm missing a slide. 281 00:27:41,000 --> 00:27:50,000 Oh, there we go. They're out of order. OK, so we have MX. 282 00:27:50,000 --> 00:28:00,000 So, how do we calculate R0? Well, R0 is the sum of LX MX. 283 00:28:00,000 --> 00:28:17,000 With the sum of the survivorship 284 00:28:17,000 --> 00:28:25,000 times the age-specific fecundity, and in this case, it sums up to 285 00:28:25,000 --> 00:28:33,000 three. So, what's happening to our unicorn population? It's growing. 286 00:28:33,000 --> 00:28:39,000 Yeah, we are getting three unicorns in each generation for every one 287 00:28:39,000 --> 00:28:46,000 that existed before. So, in our imaginary unit of our 288 00:28:46,000 --> 00:28:53,000 population, we're going to be knee deep in unicorns pretty fast. 289 00:28:53,000 --> 00:29:00,000 OK, so I forgot my watch, so I have to look at my computer. 290 00:29:00,000 --> 00:29:06,000 What if we can't follow cohort? Oh, thank you. 291 00:29:06,000 --> 00:29:11,000 How do we create the same kind of analysis for a population that we 292 00:29:11,000 --> 00:29:16,000 can't follow through time, but can only look at as a snapshot? 293 00:29:16,000 --> 00:29:22,000 OK, this is where we go to the slide. If you don't have it in your 294 00:29:22,000 --> 00:29:27,000 handout, it doesn't matter. I just got off the web this morning. 295 00:29:27,000 --> 00:29:32,000 I couldn't find a skeleton of the 296 00:29:32,000 --> 00:29:37,000 unicorn because, of course, that's totally imaginary, 297 00:29:37,000 --> 00:29:42,000 but I found a mastodon. So, just imagine that this is a unicorn, 298 00:29:42,000 --> 00:29:47,000 and I couldn't find a unicorn horn, so this is a sheep's. But, all 299 00:29:47,000 --> 00:29:52,000 these principles apply. I just discovered Images in Google, 300 00:29:52,000 --> 00:29:57,000 which is really exciting. So, you're going to get subjected 301 00:29:57,000 --> 00:30:02,000 to this for awhile. So, OK, so what you can do, 302 00:30:02,000 --> 00:30:06,000 and this has actually been done with mountain sheep, 303 00:30:06,000 --> 00:30:11,000 is you go out you find dead sheep, you find skeletons of sheep that 304 00:30:11,000 --> 00:30:15,000 have died for whatever causes. And you go out, and you sample 305 00:30:15,000 --> 00:30:19,000 until you have, say, 100 skeletons. 306 00:30:19,000 --> 00:30:24,000 And that's your cohort that you're looking at, at one point in time. 307 00:30:24,000 --> 00:30:28,000 And from their horn, you can actually tell how old they 308 00:30:28,000 --> 00:30:33,000 were when they died. You can count the number of rings, 309 00:30:33,000 --> 00:30:38,000 so that's what's here, annual horn rings. This is for a dall mountain 310 00:30:38,000 --> 00:30:43,000 sheep. So, you can say well now it died when it was two. 311 00:30:43,000 --> 00:30:47,000 That one died when it was 10. That one died when it was whatever 312 00:30:47,000 --> 00:30:52,000 age. And then you can create the same kind of life table, 313 00:30:52,000 --> 00:30:57,000 a static life table, where you have a hundred skeletons. 314 00:30:57,000 --> 00:31:02,000 That is your cohort. You look at the number dying of age 315 00:31:02,000 --> 00:31:06,000 zero to one, the number of one year olds, the number that died when they 316 00:31:06,000 --> 00:31:11,000 were one year old, the number that died when they were 317 00:31:11,000 --> 00:31:16,000 a two-year-old etc. And so, from these data, 318 00:31:16,000 --> 00:31:20,000 these are the data that you collected, you can calculate this 319 00:31:20,000 --> 00:31:25,000 column, NX, so NX is DX, or NX minus DX equals NX plus one. 320 00:31:25,000 --> 00:31:30,000 Does that make sense? I can never tell whether. 321 00:31:30,000 --> 00:31:35,000 I know if I write this on the board it might be easier, 322 00:31:35,000 --> 00:31:40,000 but it's so obvious isn't it? We are just saying that this is the 323 00:31:40,000 --> 00:31:45,000 number that died at the age. This is the number you started with, 324 00:31:45,000 --> 00:31:50,000 so that's how many are going to have that age, that age, 325 00:31:50,000 --> 00:31:55,000 and that age. And then, once you have this column, 326 00:31:55,000 --> 00:32:00,000 your proportion surviving LX, you can calculate LX. LX equals NX 327 00:32:00,000 --> 00:32:05,000 divided by N0, OK? So, we are doing exactly the same 328 00:32:05,000 --> 00:32:10,000 thing as we did before. It's just that we're getting the NX 329 00:32:10,000 --> 00:32:15,000 column instead of getting it by following the cohort. 330 00:32:15,000 --> 00:32:20,000 We're getting it by calculating it based on how old dead organisms were 331 00:32:20,000 --> 00:32:25,000 when they died. And in my ecology class that I 332 00:32:25,000 --> 00:32:30,000 teach, some years we actually go out to the Mount Auburn Cemetery. 333 00:32:30,000 --> 00:32:37,000 And you can do this from human gravestones. You can go to the 334 00:32:37,000 --> 00:32:44,000 cemetery, and pick out a number of gravestones, and see the age at 335 00:32:44,000 --> 00:32:51,000 which humans died. You create yourself a cohort, 336 00:32:51,000 --> 00:32:58,000 and you can create a life table. And you can do that for different 337 00:32:58,000 --> 00:33:06,000 eras, and see how replacements have changed. 338 00:33:06,000 --> 00:33:13,000 OK, now so that's the analysis for populations that have an age 339 00:33:13,000 --> 00:33:21,000 structure. Now we are going to go more into simpler type of population, 340 00:33:21,000 --> 00:33:29,000 and that is a population with a stable age distribution. 341 00:33:29,000 --> 00:33:46,000 And to do this, 342 00:33:46,000 --> 00:33:51,000 you're going to help me, and we're going to use your calculus 343 00:33:51,000 --> 00:33:55,000 that you've all been studying. So, instead of the unicorn now, 344 00:33:55,000 --> 00:34:00,000 have your imaginary population be a population of microbes 345 00:34:00,000 --> 00:34:06,000 that divide in half. They multiplied by dividing in half. 346 00:34:06,000 --> 00:34:12,000 So, each one of these is a microbe that's dividing in half. 347 00:34:12,000 --> 00:34:18,000 This is your mental image. This is what's called exponential 348 00:34:18,000 --> 00:34:25,000 growth. It's obvious how that happens. And we're going to model 349 00:34:25,000 --> 00:34:31,000 this population, we're going to first assume 350 00:34:31,000 --> 00:34:42,000 unlimited resources. OK, so we're going to say that the 351 00:34:42,000 --> 00:34:56,000 rate of population increase is equal to the average birth rate minus the 352 00:34:56,000 --> 00:35:11,000 average death rate times the number of cells. 353 00:35:11,000 --> 00:35:19,000 OK, so we are going to now turn this into math, and that is to say the 354 00:35:19,000 --> 00:35:28,000 dN/dt, the increase in population where N is the population number is 355 00:35:28,000 --> 00:35:36,000 equal to the birth rate minus the death rate times N which is the 356 00:35:36,000 --> 00:35:46,000 number of cells, OK? And then, we're going to let B minus 357 00:35:46,000 --> 00:35:58,000 D, the birth rate minus the death rate, be what we call r. 358 00:35:58,000 --> 00:36:08,000 And, this is what's called the intrinsic rate of increase of a 359 00:36:08,000 --> 00:36:19,000 population. OK, what are the units of r? 360 00:36:19,000 --> 00:36:30,000 One over time, exactly, time to the minus one. 361 00:36:30,000 --> 00:36:36,000 So, let's look at that more carefully. And also, 362 00:36:36,000 --> 00:36:43,000 it's a little misleading to say it's the rate of increase because r can 363 00:36:43,000 --> 00:36:49,000 be positive or negative, however it turns out. It can be 364 00:36:49,000 --> 00:36:56,000 positive or negative, but that's what it's called. 365 00:36:56,000 --> 00:37:02,000 So, we have the dN/dt equals rN. We're substituting r in this 366 00:37:02,000 --> 00:37:09,000 equation for one over N times dN/dt equals r. 367 00:37:09,000 --> 00:37:15,000 OK, so ours has the unit time to the minus one. And so, 368 00:37:15,000 --> 00:37:21,000 let's ask a question. Given N0 I give you the population 369 00:37:21,000 --> 00:37:27,000 density at some time which we're going to call T equals zero. 370 00:37:27,000 --> 00:37:33,000 Given a population growing according to this, 371 00:37:33,000 --> 00:37:39,000 which is exponential growth, what if we want to know the 372 00:37:39,000 --> 00:37:45,000 population, what N is at any time T? 373 00:37:45,000 --> 00:37:51,000 We want an equation that will give us, given N0 what would the 374 00:37:51,000 --> 00:37:57,000 population density be at some time, T? What do you have to do to this 375 00:37:57,000 --> 00:38:03,000 to get that? Yeah, so who wants to do that for me? 376 00:38:03,000 --> 00:38:10,000 Come on. You guys did this freshman year. It's the easiest thing there 377 00:38:10,000 --> 00:38:17,000 is, right? Every class I've had has had somebody who was willing to come 378 00:38:17,000 --> 00:38:24,000 up and do this. OK, so we'll just add a T there. 379 00:38:24,000 --> 00:38:31,000 So, N at sometime T is equally to N0 e to the rT. 380 00:38:31,000 --> 00:38:38,000 And so, We could say, then, r equals natural log of NT 381 00:38:38,000 --> 00:38:46,000 minus natural log of N0 divided by T. And I like to write it that way 382 00:38:46,000 --> 00:38:53,000 because then, we know what this looks like, right? 383 00:38:53,000 --> 00:39:01,000 Let's plot that. This is N and this is T. What does 384 00:39:01,000 --> 00:39:08,000 that look like? I know this is really rudimentary 385 00:39:08,000 --> 00:39:14,000 but remember we're modeling population growth. 386 00:39:14,000 --> 00:39:20,000 So here, if we plot the log of N, and this is what we do with cultures 387 00:39:20,000 --> 00:39:26,000 of microorganisms. That's a flask. Those are a lot of 388 00:39:26,000 --> 00:39:33,000 microbes in there. And what we do is we sample it at 389 00:39:33,000 --> 00:39:39,000 various points in time, and if you take the log we get a 390 00:39:39,000 --> 00:39:46,000 nice straight line that we can draw a regression through. 391 00:39:46,000 --> 00:39:53,000 And what's the slope of that line equal to? r. Exactly. 392 00:39:53,000 --> 00:40:00,000 The growth rate in the units: N to the minus one. 393 00:40:00,000 --> 00:40:12,000 OK, what's the Y intercept? N0. OK, now suppose we want to 394 00:40:12,000 --> 00:40:25,000 calculate the doubling time of the population, the time it 395 00:40:25,000 --> 00:40:37,000 takes to double. How would we do that? 396 00:40:37,000 --> 00:40:48,000 Let's first define it. It's the time, T, that it takes for 397 00:40:48,000 --> 00:40:59,000 NT to equal to N0, right? If we start with N0 the 398 00:40:59,000 --> 00:41:10,000 population doubles. Then, that's the time at NT. 399 00:41:10,000 --> 00:41:22,000 So, we want to solve for that T for the time it takes for the 400 00:41:22,000 --> 00:41:33,000 population to double. Since natural log of NT over N0 401 00:41:33,000 --> 00:41:45,000 equals rT, then the natural log of, sorry, 2N0 over N0 equals rT, and T 402 00:41:45,000 --> 00:41:57,000 equals the natural log of two divided by r equals our 403 00:41:57,000 --> 00:42:05,000 doubling time. Does that make sense? 404 00:42:05,000 --> 00:42:09,000 I'll put this out there so you can see it better. 405 00:42:09,000 --> 00:42:14,000 What's the natural log of two? 0.69, thank you, always a handy 406 00:42:14,000 --> 00:42:18,000 thing to have in our repertoire. So, that's just the way, it's 407 00:42:18,000 --> 00:42:23,000 easier to think about the time it takes for a population to double 408 00:42:23,000 --> 00:42:26,000 often, then the instantaneous growth rate.