1 00:00:10,440 --> 00:00:23,590 Monomer of nucleic acids is called a nucleotide, which I 2 00:00:23,590 --> 00:00:24,860 will abbreviate NTIDE. 3 00:00:27,380 --> 00:00:30,500 And a nucleotide comprises three parts-- 4 00:00:30,500 --> 00:00:33,505 a phosphate, a sugar, and a base. 5 00:00:46,650 --> 00:00:54,650 Phosphate, sugar, base --that we will abbreviate P-S-B. The 6 00:00:54,650 --> 00:01:12,590 polymer of nucleotides makes up ribonucleic acid, RNA; or 7 00:01:12,590 --> 00:01:15,360 deoxyribonucleic acid, DNA. 8 00:01:15,360 --> 00:01:17,170 You need to know the full names of those. 9 00:01:17,170 --> 00:01:19,040 I'm not going to write them out. 10 00:01:19,040 --> 00:01:23,430 And those are all polynucleotides. 11 00:01:29,950 --> 00:01:32,420 And the way that polynucleotides are put 12 00:01:32,420 --> 00:01:36,710 together is through the joining of the phosphate and 13 00:01:36,710 --> 00:01:41,030 sugar into a sugar phosphate backbone, from 14 00:01:41,030 --> 00:01:43,230 which the bases hang. 15 00:01:43,230 --> 00:01:45,860 And so they look kind of like this. 16 00:01:45,860 --> 00:01:50,840 There's phosphate, sugar, phosphate, 17 00:01:50,840 --> 00:01:53,860 sugar, phosphate, sugar. 18 00:01:53,860 --> 00:01:56,480 And from the sugar hangs the base. 19 00:02:00,240 --> 00:02:04,700 The phosphate and the sugar, as I've just said, forms the 20 00:02:04,700 --> 00:02:06,990 sugar phosphate backbone. 21 00:02:09,680 --> 00:02:15,005 And the bases, as we'll discuss in a moment, comprise 22 00:02:15,005 --> 00:02:20,075 the information that is encoded in nucleic acids. 23 00:02:28,110 --> 00:02:31,230 Let's talk more about this nucleotide and the structure 24 00:02:31,230 --> 00:02:34,810 of the nucleotide and the kinds of components there are 25 00:02:34,810 --> 00:02:37,050 in the nucleotide. 26 00:02:37,050 --> 00:02:41,940 The sugar of the nucleotide is a pentose. 27 00:02:41,940 --> 00:02:44,920 It's a five carbon sugar. 28 00:02:44,920 --> 00:02:50,370 It is called ribose, and it's cyclic. 29 00:02:50,370 --> 00:02:55,565 And it's called ribose in RNA, and as you will see, 30 00:02:55,565 --> 00:03:01,240 deoxyribose in DNA. 31 00:03:07,790 --> 00:03:10,510 There are four bases in DNA. 32 00:03:18,630 --> 00:03:28,640 They are called adenine, guanine, 33 00:03:28,640 --> 00:03:32,300 cytosine, and thymine. 34 00:03:35,910 --> 00:03:39,490 And they are abbreviated A, G, C, and T-- 35 00:03:39,490 --> 00:03:40,620 by their first initial. 36 00:03:40,620 --> 00:03:43,260 But you need to know the whole name. 37 00:03:43,260 --> 00:03:50,610 In RNA, the bases are the same, 38 00:03:50,610 --> 00:03:53,680 except instead of thymine-- 39 00:03:53,680 --> 00:03:55,200 there is no thymine. 40 00:03:55,200 --> 00:03:58,660 Instead, there is something called uracil, which is 41 00:03:58,660 --> 00:04:04,180 closely related, and abbreviated U. 42 00:04:04,180 --> 00:04:07,250 The bases have a particular structure. 43 00:04:07,250 --> 00:04:10,760 You do not need to be able to draw them, but you should be 44 00:04:10,760 --> 00:04:13,480 able to recognize the class of base. 45 00:04:16,010 --> 00:04:20,640 There is a class called purines, which 46 00:04:20,640 --> 00:04:21,950 comprise two rings. 47 00:04:21,950 --> 00:04:23,680 I'll show you some slides in a moment. 48 00:04:27,200 --> 00:04:31,430 And adenine and guanine fall into that category. 49 00:04:31,430 --> 00:04:39,230 And then, there's another class called pyrimidines, 50 00:04:39,230 --> 00:04:42,880 which are made of one ring. 51 00:04:42,880 --> 00:04:48,205 And cytosine, thymine, and uracil fall into that class. 52 00:04:56,510 --> 00:04:58,860 Let's draw the structure of a nucleotide 53 00:04:58,860 --> 00:05:00,500 out in chemical formula. 54 00:05:00,500 --> 00:05:01,930 We're not going to draw the bases. 55 00:05:01,930 --> 00:05:05,270 We're going to draw mostly the sugar and the phosphate, 56 00:05:05,270 --> 00:05:07,570 because it will be important when we think about 57 00:05:07,570 --> 00:05:09,400 polymerizing nucleotides. 58 00:05:09,400 --> 00:05:11,500 And then I'll show you some slides. 59 00:05:11,500 --> 00:05:12,970 So nucleotide structure-- 60 00:05:19,950 --> 00:05:23,040 the best way to draw a nucleotide structure is to 61 00:05:23,040 --> 00:05:24,290 start with the sugar. 62 00:05:26,680 --> 00:05:28,920 So start with an oxygen. 63 00:05:28,920 --> 00:05:31,920 And then you can put in the carbons. 64 00:05:35,450 --> 00:05:39,990 And the carbons are numbered, because, in many 65 00:05:39,990 --> 00:05:43,440 macromolecules, there are so many carbons, it can be very 66 00:05:43,440 --> 00:05:45,720 useful to give them specific numbers. 67 00:05:45,720 --> 00:05:47,950 And that's true in the sugar. 68 00:05:47,950 --> 00:05:49,770 It's also true in the bases. 69 00:05:49,770 --> 00:05:52,590 But the sugar numberings of the carbons are very 70 00:05:52,590 --> 00:05:53,890 important for you. 71 00:05:53,890 --> 00:05:59,510 There's a one prime carbon, two prime, three prime, four 72 00:05:59,510 --> 00:06:02,730 prime, and five prime. 73 00:06:02,730 --> 00:06:06,045 The base is attached to the one prime carbon. 74 00:06:09,450 --> 00:06:12,595 And the phosphate is attached to the five prime carbon. 75 00:06:26,390 --> 00:06:30,700 The two prime and the three prime carbon are also notable. 76 00:06:30,700 --> 00:06:34,680 The three prime carbon always has a hydroxyl group. 77 00:06:34,680 --> 00:06:41,060 And it's this hydroxyl group and this hydroxyl group of the 78 00:06:41,060 --> 00:06:45,180 phosphate that react together when the sugar phosphate 79 00:06:45,180 --> 00:06:48,370 backbone forms covalent bonds. 80 00:06:48,370 --> 00:06:54,110 The two prime carbon can either have a hydrogen, as in 81 00:06:54,110 --> 00:07:06,630 DNA, or a hydroxyl as RNA. 82 00:07:06,630 --> 00:07:10,065 Hydroxyl groups are reactive, and having this extra hydroxyl 83 00:07:10,065 --> 00:07:14,720 group on RNA makes this sugar more reactive 84 00:07:14,720 --> 00:07:16,001 than the one in DNA. 85 00:07:19,440 --> 00:07:20,240 OK. 86 00:07:20,240 --> 00:07:23,450 That is your nucleotide structure. 87 00:07:23,450 --> 00:07:25,996 And you should know it. 88 00:07:25,996 --> 00:07:28,205 Let's see what we have for slides here. 89 00:07:30,900 --> 00:07:34,190 Nucleic acid monomer and polymer. 90 00:07:34,190 --> 00:07:37,420 We're going to draw in one moment the nucleic acid 91 00:07:37,420 --> 00:07:40,210 polymer on the board, but here it is. 92 00:07:40,210 --> 00:07:47,080 Here is the sugar, the base, and the phosphate group. 93 00:07:47,080 --> 00:07:47,500 All right. 94 00:07:47,500 --> 00:07:50,190 Let's think about how you actually get this sugar 95 00:07:50,190 --> 00:07:52,610 phosphate backbone formed. 96 00:07:52,610 --> 00:07:57,490 And let us draw formation of a dinucleotide. 97 00:08:00,080 --> 00:08:03,490 And I'm going to abbreviate on one of the nucleotides the 98 00:08:03,490 --> 00:08:07,840 phosphate as PO4, otherwise we won't fit this on the board. 99 00:08:07,840 --> 00:08:12,160 So let's put the sugars first. 100 00:08:12,160 --> 00:08:17,030 And let me actually just make sure that you guys understand 101 00:08:17,030 --> 00:08:20,040 that the sugar can be drawn as I've drawn it, with all the 102 00:08:20,040 --> 00:08:25,360 carbons there, or it can be drawn in this way, where the 103 00:08:25,360 --> 00:08:30,810 carbons are the apices, or at the ends of a line. 104 00:08:30,810 --> 00:08:34,350 If this is a new you-- if this is new organic chemistry 105 00:08:34,350 --> 00:08:37,640 formula to you or chemical formula to you, then please 106 00:08:37,640 --> 00:08:40,490 come and see one of us, and we'll make sure that you get 107 00:08:40,490 --> 00:08:42,770 up to speed, because you really do need to know that 108 00:08:42,770 --> 00:08:44,400 for this course. 109 00:08:44,400 --> 00:08:48,890 Okay so let us draw some sugars. 110 00:08:48,890 --> 00:08:51,700 Actually, I'm going to erase this one and put it even 111 00:08:51,700 --> 00:08:55,960 closer to the top of the board, because these are small 112 00:08:55,960 --> 00:08:57,880 boards no-- 113 00:08:57,880 --> 00:09:00,435 new boards, nice but small. 114 00:09:03,290 --> 00:09:03,680 Okay. 115 00:09:03,680 --> 00:09:09,125 And we're going to put here a phosphate group. 116 00:09:09,125 --> 00:09:10,925 I'm going to extend this. 117 00:09:10,925 --> 00:09:14,560 And we'll put a phosphate group here. 118 00:09:14,560 --> 00:09:15,810 And we're going to put a base. 119 00:09:18,170 --> 00:09:23,130 And we're going to put a three prime hydroxyl. 120 00:09:23,130 --> 00:09:25,730 So here is the five prime carbon and 121 00:09:25,730 --> 00:09:27,920 the three prime hydroxyl. 122 00:09:27,920 --> 00:09:32,810 And this is going to be nucleotide one. 123 00:09:32,810 --> 00:09:35,570 And then we'll draw an identical one below it, which 124 00:09:35,570 --> 00:09:38,240 will be nucleotide two, where now I'll 125 00:09:38,240 --> 00:09:39,380 draw out the phosphate. 126 00:09:39,380 --> 00:09:50,010 Let's again start with the sugar and a hydroxyl. 127 00:09:50,010 --> 00:09:58,810 And then let's put in the phosphate. 128 00:09:58,810 --> 00:09:59,800 Okay. 129 00:09:59,800 --> 00:10:02,250 And this is going to be nucleotide two-- 130 00:10:02,250 --> 00:10:05,520 so nucleotide one and nucleotide two. 131 00:10:09,630 --> 00:10:13,490 The phosphate, hydroxyl, and the sugar-- 132 00:10:13,490 --> 00:10:16,582 and we can put in some negatives here. 133 00:10:16,582 --> 00:10:18,370 On the phosphate, that's fine. 134 00:10:18,370 --> 00:10:21,180 Depends on the pH as to what the ionization of the 135 00:10:21,180 --> 00:10:22,800 phosphate group is. 136 00:10:22,800 --> 00:10:26,870 This hydroxyl group and this phosphate group, 137 00:10:26,870 --> 00:10:30,170 are going to interact. 138 00:10:30,170 --> 00:10:41,050 And the outcome is going to be a dinucleotide, where the two 139 00:10:41,050 --> 00:10:44,170 nucleotides, as you will see, are joined by a particular 140 00:10:44,170 --> 00:10:47,630 linkage called a phosphodiester linkage or a 141 00:10:47,630 --> 00:10:49,270 phosphodiester bond. 142 00:10:52,010 --> 00:10:55,700 We'll leave a phosphate there attached to 143 00:10:55,700 --> 00:10:59,230 the five prime carbon. 144 00:10:59,230 --> 00:11:01,020 Here's the first base. 145 00:11:01,020 --> 00:11:05,000 And now, we've got-- 146 00:11:05,000 --> 00:11:06,490 and I've got to fit it in. 147 00:11:25,990 --> 00:11:26,820 Okay. 148 00:11:26,820 --> 00:11:28,810 So here is our dinucleotide-- 149 00:11:28,810 --> 00:11:31,050 slightly skewed, but OK. 150 00:11:31,050 --> 00:11:33,850 And there are three features that I want to point out to 151 00:11:33,850 --> 00:11:35,980 you on this dinucleotide. 152 00:11:35,980 --> 00:11:38,930 The first is the bond that joins them together, 153 00:11:38,930 --> 00:11:42,470 which is this guy. 154 00:11:42,470 --> 00:11:51,710 It is called a phosphodiester bond or 155 00:11:51,710 --> 00:11:55,830 phosphodiester linkage. 156 00:11:55,830 --> 00:11:58,620 And the second is that the two ends of this 157 00:11:58,620 --> 00:12:00,820 dinucleotide are different. 158 00:12:00,820 --> 00:12:05,680 On one end, there is a free phosphate group. 159 00:12:05,680 --> 00:12:08,930 And where there is a free phosphate group, that is 160 00:12:08,930 --> 00:12:13,380 called the five prime phosphate, or 161 00:12:13,380 --> 00:12:16,474 the five prime end. 162 00:12:16,474 --> 00:12:20,330 But the five prime end has got a phosphate. 163 00:12:20,330 --> 00:12:22,390 That's part of its property. 164 00:12:22,390 --> 00:12:25,040 On the other end, you'll see, there is a 165 00:12:25,040 --> 00:12:27,380 free hydroxyl group. 166 00:12:27,380 --> 00:12:31,540 And that is called the three prime hydroxyl, or 167 00:12:31,540 --> 00:12:34,610 the three prime end. 168 00:12:34,610 --> 00:12:37,390 And they're equivalent, pretty much. 169 00:12:37,390 --> 00:12:40,210 But you should know that at one side, there's a free 170 00:12:40,210 --> 00:12:42,990 hydroxyl group, the other side a free phosphate group. 171 00:12:42,990 --> 00:12:46,110 You will see later on that this is pivotal in 172 00:12:46,110 --> 00:12:50,950 synthesizing DNA, as in DNA replication and mitosis, 173 00:12:50,950 --> 00:12:53,500 meiosis, and so on. 174 00:12:53,500 --> 00:12:54,730 All right. 175 00:12:54,730 --> 00:12:55,900 Few more slides-- 176 00:12:55,900 --> 00:13:01,080 here are the sugars that are found in nucleic acids. 177 00:13:01,080 --> 00:13:04,030 There's the deoxyribose and ribose. 178 00:13:04,030 --> 00:13:06,370 I just put these up for you for recap. 179 00:13:06,370 --> 00:13:07,730 Here are the bases. 180 00:13:07,730 --> 00:13:10,010 Here are the pyrimidines-- 181 00:13:10,010 --> 00:13:11,920 cytosine, thymine, and uracil-- 182 00:13:11,920 --> 00:13:14,250 and then the purines, with this 183 00:13:14,250 --> 00:13:18,090 interesting di-ring structure. 184 00:13:18,090 --> 00:13:20,200 This I drew for you, okay? 185 00:13:20,200 --> 00:13:21,800 And so it's on your PowerPoint. 186 00:13:21,800 --> 00:13:24,760 If you're a bit shaky as to what's on the board and how we 187 00:13:24,760 --> 00:13:28,770 got there, you can go and get this from the PowerPoints that 188 00:13:28,770 --> 00:13:30,020 I'll post after class. 189 00:13:35,920 --> 00:13:37,170 All right. 190 00:13:40,150 --> 00:13:45,690 Now, in contrast to lipids and carbohydrates, nucleic acids, 191 00:13:45,690 --> 00:13:49,100 and as you will see, proteins, have two extraordinary 192 00:13:49,100 --> 00:13:53,920 properties that allow them to encode information in really a 193 00:13:53,920 --> 00:13:56,920 way that is extremely rich. 194 00:13:56,920 --> 00:14:02,430 And those two properties I've already touched on. 195 00:14:02,430 --> 00:14:06,180 One is that the ends are different. 196 00:14:06,180 --> 00:14:08,550 They're different in a dinucleotide, and they're 197 00:14:08,550 --> 00:14:11,730 different in a polynucleotide that's a 198 00:14:11,730 --> 00:14:14,050 thousand nucleotides long. 199 00:14:14,050 --> 00:14:17,250 So they have different ends. 200 00:14:17,250 --> 00:14:22,020 And the bases have a linear order. 201 00:14:25,020 --> 00:14:31,640 And this linear order is part and parcel of the information 202 00:14:31,640 --> 00:14:34,570 that the nucleic acid encodes. 203 00:14:34,570 --> 00:14:37,380 So let's draw out, for instance--- 204 00:14:37,380 --> 00:14:43,220 and we're going to start with five prime. 205 00:14:43,220 --> 00:14:53,830 Phosphate, sugar, phosphate, sugar, phosphate, sugar 206 00:14:53,830 --> 00:14:54,300 phosphate-- 207 00:14:54,300 --> 00:14:58,950 and we're going to end with the sugar that has the three 208 00:14:58,950 --> 00:15:01,410 prime hydroxyl. 209 00:15:01,410 --> 00:15:04,960 Okay, so we've got a five prime and a three prime end. 210 00:15:04,960 --> 00:15:09,585 And from this, the bases are hanging. 211 00:15:13,480 --> 00:15:18,860 Now, when nucleotides are incorporated into a nucleic 212 00:15:18,860 --> 00:15:22,580 acid polymer, there is an order of synthesis, which is 213 00:15:22,580 --> 00:15:26,410 why the linear order of the molecule eventually can be 214 00:15:26,410 --> 00:15:28,350 used for information. 215 00:15:28,350 --> 00:15:32,300 The base nearest the free five prime phosphate 216 00:15:32,300 --> 00:15:33,550 is the first added. 217 00:15:37,320 --> 00:15:38,970 And the base-- 218 00:15:38,970 --> 00:15:40,810 so it's part of the nucleotide-- 219 00:15:40,810 --> 00:15:45,740 nearest the three prime hydroxyl is the last added. 220 00:15:45,740 --> 00:15:48,810 It's really important that you know this. 221 00:15:48,810 --> 00:15:52,940 Furthermore, when we write out nucleotides, nucleotide 222 00:15:52,940 --> 00:15:56,310 sequence, when we write out a nucleic acid sequence, we 223 00:15:56,310 --> 00:15:59,360 don't generally write the sugar phosphate backbone in. 224 00:15:59,360 --> 00:16:03,410 We just write the bases. 225 00:16:03,410 --> 00:16:08,678 So it's written five prime, base, base, 226 00:16:08,678 --> 00:16:13,080 base, base, three prime. 227 00:16:13,080 --> 00:16:15,940 But of course, the bases can be anything. 228 00:16:15,940 --> 00:16:24,320 So for example, we could have five prime, adenine, guanine, 229 00:16:24,320 --> 00:16:27,430 guanine, cytosine, three prime. 230 00:16:27,430 --> 00:16:29,780 And there's a convention that you have to follow. 231 00:16:29,780 --> 00:16:32,120 And it doesn't matter how long you're in this business. 232 00:16:32,120 --> 00:16:35,960 When you write out a nucleic acid polymer, you always write 233 00:16:35,960 --> 00:16:38,770 the five prime and the three prime end. 234 00:16:38,770 --> 00:16:42,860 I've been in this business for 30 years now, and I still have 235 00:16:42,860 --> 00:16:45,080 to write the five prime and the three prime end. 236 00:16:45,080 --> 00:16:48,180 If you don't, you get lost, and you will get mixed up in 237 00:16:48,180 --> 00:16:53,030 your calculations, both in this course and in real life. 238 00:16:53,030 --> 00:16:56,670 Now, there are lots of combinations of bases, even 239 00:16:56,670 --> 00:17:00,380 though there are only four bases. 240 00:17:00,380 --> 00:17:06,040 For example, if there are four bases and you have a three 241 00:17:06,040 --> 00:17:07,290 nucleotide polymer-- 242 00:17:12,000 --> 00:17:16,579 four bases, three possibilities, 64 243 00:17:16,579 --> 00:17:17,829 possibilities. 244 00:17:23,930 --> 00:17:30,800 Genes can be thousands and thousands of bases in length. 245 00:17:30,800 --> 00:17:35,550 And so the information, the combinatorics involved in the 246 00:17:35,550 --> 00:17:38,700 nucleic acid polymer is very large. 247 00:17:38,700 --> 00:17:55,420 So genes can be, let's say, 100 to ten to the fifth 248 00:17:55,420 --> 00:17:59,600 nucleotides long. 249 00:17:59,600 --> 00:18:02,330 And so the number of possibilities is really 250 00:18:02,330 --> 00:18:03,420 extraordinary. 251 00:18:03,420 --> 00:18:06,500 And it's one of the reasons that all of life can be 252 00:18:06,500 --> 00:18:08,335 encoded in nucleic acids. 253 00:18:15,110 --> 00:18:16,960 And the last thing that I want to tell you 254 00:18:16,960 --> 00:18:20,010 about nucleic acids-- 255 00:18:20,010 --> 00:18:23,220 which will become and will remain one of the most 256 00:18:23,220 --> 00:18:25,960 important things you learn in this class-- 257 00:18:25,960 --> 00:18:29,220 is that DNA is usually double stranded. 258 00:18:29,220 --> 00:18:33,180 RNA is too, but it's really DNA that uses this in an 259 00:18:33,180 --> 00:18:36,085 extraordinarily important way. 260 00:18:36,085 --> 00:18:42,480 So DNA is usually double stranded. 261 00:18:46,300 --> 00:18:47,550 What does that mean? 262 00:18:52,700 --> 00:18:55,760 It gets to be double stranded via 263 00:18:55,760 --> 00:18:57,420 something called base pairing-- 264 00:19:03,410 --> 00:19:07,240 you'll see what this means in a moment-- 265 00:19:07,240 --> 00:19:13,850 which also means, or there's another term that's used, 266 00:19:13,850 --> 00:19:19,100 which is complementarity, as you will see. 267 00:19:19,100 --> 00:19:21,430 And this double strandedness does not 268 00:19:21,430 --> 00:19:22,890 involve covalent bonds. 269 00:19:22,890 --> 00:19:26,230 It involves that special type of bonds that we discussed 270 00:19:26,230 --> 00:19:28,765 last time, which are the hydrogen bonds. 271 00:19:31,910 --> 00:19:35,400 And there are rules about this. 272 00:19:35,400 --> 00:19:43,410 Adenine will form two hydrogen bonds with thymine or uracil. 273 00:19:43,410 --> 00:19:48,520 Guanine forms three hydrogen bonds with cytosine. 274 00:19:48,520 --> 00:19:52,110 And that is a rule that is one of the most important rules in 275 00:19:52,110 --> 00:19:53,360 nucleic acids. 276 00:19:57,460 --> 00:20:01,380 From your book, here is a picture of the two bases, 277 00:20:01,380 --> 00:20:07,360 adenine and thymine, that can be lain opposite one another 278 00:20:07,360 --> 00:20:11,990 such that these dotted lines are hydrogen bonds between 279 00:20:11,990 --> 00:20:15,120 oxygen and hydrogen or nitrogen and hydrogen-- 280 00:20:15,120 --> 00:20:17,805 and the same kind of thing for guanine and cytosine. 281 00:20:17,805 --> 00:20:20,500 You don't need to know these structures, exactly, but you 282 00:20:20,500 --> 00:20:24,440 do need to know base pairing inside, outside, and 283 00:20:24,440 --> 00:20:25,550 never forget it. 284 00:20:25,550 --> 00:20:26,800 Okay. 285 00:20:28,780 --> 00:20:30,970 Why is this important? 286 00:20:30,970 --> 00:20:32,640 I'll tell you why this is important. 287 00:20:32,640 --> 00:20:35,960 It's important for DNA replication and for the 288 00:20:35,960 --> 00:20:38,950 passage of hereditary information from one 289 00:20:38,950 --> 00:20:41,270 generation to the next. 290 00:20:41,270 --> 00:20:52,070 So, in DNA replication, the idea is to pass genes on, 291 00:20:52,070 --> 00:20:55,620 unperturbed, in the same sequence from one generation 292 00:20:55,620 --> 00:20:59,640 to the next at every cell division. 293 00:20:59,640 --> 00:21:07,720 So let's just, for instance, start with a polymer here. 294 00:21:07,720 --> 00:21:10,920 Ah, and something else that I needed to tell you, which I 295 00:21:10,920 --> 00:21:16,160 will in a second, is that when nucleic acids form double 296 00:21:16,160 --> 00:21:20,810 stranded structure, one strand of nucleic acid-- 297 00:21:20,810 --> 00:21:22,110 my one arm-- 298 00:21:22,110 --> 00:21:25,630 will form a double stranded structure with another strand 299 00:21:25,630 --> 00:21:28,310 of nucleic acids, like so. 300 00:21:28,310 --> 00:21:29,030 Okay. 301 00:21:29,030 --> 00:21:30,560 That's what's referred to up there. 302 00:21:30,560 --> 00:21:33,010 The adenine's on one polymer. 303 00:21:33,010 --> 00:21:35,080 The thymine is on another polymer. 304 00:21:35,080 --> 00:21:39,180 When these polymers form, they form in what's called an 305 00:21:39,180 --> 00:21:40,770 anti-parallel direction. 306 00:21:40,770 --> 00:21:42,280 It's really hard to do. 307 00:21:42,280 --> 00:21:46,890 But if this is my five prime end and three prime end, the 308 00:21:46,890 --> 00:21:50,450 five prime end of one and the will be opposite the three 309 00:21:50,450 --> 00:21:51,690 prime end of another strand. 310 00:21:51,690 --> 00:21:52,880 I guess I can do it this way-- 311 00:21:52,880 --> 00:21:54,130 topologically easier. 312 00:21:56,680 --> 00:21:57,290 Okay-- 313 00:21:57,290 --> 00:22:01,120 so five prime opposite three prime, five prime opposite 314 00:22:01,120 --> 00:22:02,770 three prime. 315 00:22:02,770 --> 00:22:07,310 So let's draw the complement of this for 316 00:22:07,310 --> 00:22:09,350 the nucleotide polymer. 317 00:22:09,350 --> 00:22:15,100 There'll be thymine, cytosine, adenine, thymine. 318 00:22:15,100 --> 00:22:18,420 And look what I've done to the five primes and three prime. 319 00:22:18,420 --> 00:22:22,730 Means they are one five prime opposite a three prime, and 320 00:22:22,730 --> 00:22:25,630 the other three prime opposite a five prime. 321 00:22:25,630 --> 00:22:32,200 This arrangement called an anti-parallel arrangement of 322 00:22:32,200 --> 00:22:33,710 nucleic acids. 323 00:22:33,710 --> 00:22:37,140 And it is super important that you never forget this. 324 00:22:37,140 --> 00:22:42,390 During DNA replication, the strands of this double 325 00:22:42,390 --> 00:22:45,060 stranded polymer separate. 326 00:22:54,120 --> 00:23:00,350 And so you have five prime AGTA three prime-- 327 00:23:00,350 --> 00:23:01,760 is one strand-- 328 00:23:01,760 --> 00:23:09,740 plus three prime TCAT five prime-- two single strands. 329 00:23:09,740 --> 00:23:13,460 And here's the magic, and this is what Watson and Crick got 330 00:23:13,460 --> 00:23:18,080 the Nobel Prize for long ago for understanding that when 331 00:23:18,080 --> 00:23:22,330 DNA replicates, those strands get filled in. 332 00:23:22,330 --> 00:23:29,820 So this five prime AGTA three prime will now get synthesized 333 00:23:29,820 --> 00:23:33,000 opposite its complement-- 334 00:23:33,000 --> 00:23:39,800 three prime of TCAT five prime plus this guy-- 335 00:23:39,800 --> 00:23:48,420 three prime TCAT five prime will get its complement made. 336 00:23:48,420 --> 00:23:50,600 And look what you have got. 337 00:23:50,600 --> 00:23:54,540 You have started with one strand, one double stranded 338 00:23:54,540 --> 00:24:00,000 moiety, and you've landed up with two identical replicas of 339 00:24:00,000 --> 00:24:01,495 what you started with-- 340 00:24:01,495 --> 00:24:03,645 so two identical replicates. 341 00:24:08,140 --> 00:24:11,980 That's redundant, but it really pushes the point home-- 342 00:24:11,980 --> 00:24:18,230 two identical replicates of this parent molecule that we 343 00:24:18,230 --> 00:24:19,170 started with. 344 00:24:19,170 --> 00:24:21,700 We'll have a lot more to say about this when we spend a 345 00:24:21,700 --> 00:24:24,430 whole lecture on DNA replication, but you should 346 00:24:24,430 --> 00:24:29,160 understand that this is one of the profound natures of DNA as 347 00:24:29,160 --> 00:24:30,410 the hereditary information. 348 00:24:34,030 --> 00:24:37,270 And from your book-- double stranded DNA. 349 00:24:37,270 --> 00:24:41,040 We'll have more to say about this, but double stranded DNA, 350 00:24:41,040 --> 00:24:44,450 because of chemical considerations, goes into its 351 00:24:44,450 --> 00:24:47,980 most stable chemical state, which is this very beautiful 352 00:24:47,980 --> 00:24:53,250 double helix that has structure and is able to pack 353 00:24:53,250 --> 00:24:56,390 very tightly so that you can get lots of genetic 354 00:24:56,390 --> 00:24:57,860 information in one cell. 355 00:25:02,300 --> 00:25:04,110 Last thing about nucleic acids-- 356 00:25:04,110 --> 00:25:08,940 RNA is often single stranded, but it can also form 357 00:25:08,940 --> 00:25:11,770 structures that are partially double stranded. 358 00:25:11,770 --> 00:25:15,040 And this is one such RNA that's formed this very 359 00:25:15,040 --> 00:25:17,610 complicated, partially double stranded molecule.